1. Home
  2. Mutant Lines
  3. 16-0508-1

16-0508-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7232954 [Map]; Strand: w
      • AT1G20810.1 - [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: 0; Region: exon4 (CDS)
      • AT1G20816.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -814; Region: promoter
    Flanking Genome Sequence: 16-0508-1 - 5-prime edge 
    ACTTACGAGT TCAAGGTGGG ATCTACGCCA GGAAAGGAAA GGAAGCGTGA 
    ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7232890 [Map]; Strand: w
      • AT1G20810.1 - [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: 0; Region: exon4 (CDS)
      • AT1G20816.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -878; Region: promoter
    Flanking Genome Sequence: 16-0508-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGTCGTAAGG CTGCTCCAGA AAGAAGTAAG CCACCATCAA ACTAAAAATT 
    ATGCAGAATC TAATCAAAAG GGATAGATGG TGAAGTAACC TGAGCAATAC 
    TACGGTTTCC AGCTAAAAGC T

AT1G20810.1

Model type
Protein coding
Short Description
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G10060.1); Has 1763 Blast hits to 1744 proteins in 606 species: Archae - 0; Bacteria - 1027; Metazoa - 95; Fungi - 57; Plants - 263; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20816.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76405.2); Has 52 Blast hits to 52 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR