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16-0514-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)
stamen (PO:0009029)
  • abnormal (PATO:0000460)
    (Flowers::stamen)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1487737 [Map]; Strand: w
      • AT1G05150.1 - [+] show detail - Calcium-binding tetratricopeptide family protein
        Distance: -777; Region: promoter
      • AT1G05160.1 - [+] show detail - cytochrome P450, family 88, subfamily A, polypeptide 3
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 16-0514-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CTAATCTCGA CTCTGTTTTG TCTCCTCCGG ATAATAGTGG TGGTGTGAAA 
    ATAACTCGTA TTCCGGTCAC CAAGAGCGAT CCACTTCTCT CTCGATTTTT 
    GAAACCAAAT GGTTTCCTCT TGTTCCAGCA CCACATCAAA CGCTTTGGAT 
    CAACTCTTCT TCTTTTCGCA ACAGAGCATC CGTTTGTGTG ACATCCAACG 
    CATCCTGACT TAGTTTTATT TCCCCCATTA ACGCCTCCTT CTTCTTGTGG 
    ACATCACCGA AGACGTCACG GTTCCACCTC TTTAACTTAA CTCTCAATTC 
    ATTCAGAGCC TCTGGAGTTT TTAACCCAAC ATCCCAGGAC GCCACCAGCA 
    ACTCTCTGAA ACTTGGATGC TTTAGCCAGG CTGCCTCAAA ACGAAACTAA 
    ATATGGGACT TTGATAACAA TCACTTGTTT CCAAAGATTA GGCTCATATC 
    ATTCACACAA CTTTACTCTT AAACATTCTT TTTAGCAAAT CATATAGGTA 
    TTGGACTTTG AGCTGGATCG TGGTTATAAA TCAACCAAAC AAAGGTTATA 
    GTATGTCCCA AAATGTAAAT CAAAATAGAT AAGAAAAAAG AAAAATGAAA 
    AAAGAAATGT GTTATAAAGG AGAGAATAAG CCCACACAGG CACACAGGCA 
    CACNCCACAN CCCTGACANN ANNGCCACTA TNTGCTTTNA TNCNNNGACC 
    CNCNNACAAA AAAANCNNCN NGNANNCCNT TNGGNTTGGN CCGNNGNNNG 
    ANGAAANAAA AAA

AT1G05150.1

Model type
Protein coding
Short Description
Calcium-binding tetratricopeptide family protein
Computational Description
Calcium-binding tetratricopeptide family protein; FUNCTIONS IN: binding, zinc ion binding, calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), EF-HAND 2 (InterPro:IPR018249), Zinc finger, ZZ-type (InterPro:IPR000433), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Calcium-binding tetratricopeptide family protein (TAIR:AT2G32450.1); Has 35451 Blast hits to 16647 proteins in 1701 species: Archae - 1586; Bacteria - 18304; Metazoa - 4207; Fungi - 680; Plants - 951; Viruses - 0; Other Eukaryotes - 9723 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05160.1

Model type
Protein coding
Short Description
cytochrome P450, family 88, subfamily A, polypeptide 3
Curator Summary
Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family.
Computational Description
"cytochrome P450, family 88, subfamily A, polypeptide 3" (CYP88A3); CONTAINS InterPro DOMAIN/s: Cytochrome P450, B-class (InterPro:IPR002397), Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: ent-kaurenoic acid hydroxylase 2 (TAIR:AT2G32440.2); Has 36129 Blast hits to 36053 proteins in 1833 species: Archae - 82; Bacteria - 8530; Metazoa - 11168; Fungi - 6175; Plants - 8031; Viruses - 6; Other Eukaryotes - 2137 (source: NCBI BLink).
Link
InterPro Scan - TAIR