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16-0525-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 295174 [Map]; Strand: c
      • AT3G01820.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G01830.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -880; Region: promoter
      • AT3G01830.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -880; Region: promoter
    Flanking Genome Sequence: 16-0525-1 - 5-prime edge 
    AGTACTTGTA CGGAGATGAT CGCCGCCTCG CGGAACCGAG GCTTGGGTTG 
    GATGGATCGG GGCCGGATAG AGGAGTGCAG TGGGTGCTCA TGGGAGCCCC 
    TGGAGCATGG AGGCACGTCT TCGCCGAGAG ACTCTCCAAA CTGCTTGAAG 
    TTCCTCACAT TTCCATGGGG TCCCTTGTCC GTCAAGAACT TAACCCTAGA 
    TCTTCTCTCT ACAAGGAGGT GCTACTCTTG TCTTCTCTCT AAATTTGAAT 
    TGATTCGCTT TCTCTTTTAC CTTCTTCTTT TAAAAAGCCA TCTTTTGCTT 
    TTCTTCTTTC GTTGAAAATG TTCACCTTTT TATGTTGTTA CTCGTTCGTG 
    TTGATTATTT TGATTCATAA GATGTTTGAT TAGTGATTAT TGTCTANATT 
    ATGATCACCT AATGTGAATT

AT3G01820.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenosine kinase (TAIR:AT2G37250.1); Has 9469 Blast hits to 9393 proteins in 2915 species: Archae - 95; Bacteria - 5951; Metazoa - 891; Fungi - 419; Plants - 430; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01830.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-like 38 (TAIR:AT1G76650.3); Has 5650 Blast hits to 5606 proteins in 833 species: Archae - 0; Bacteria - 6; Metazoa - 2238; Fungi - 938; Plants - 1778; Viruses - 0; Other Eukaryotes - 690 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01830.2

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calmodulin like 37 (TAIR:AT5G42380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR