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16-0536-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94339 [Map]; Strand: c
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-0536-1 - 5-prime edge 
    GTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGG GTACCTTTCA CTGTGCCGAC TTGGATGATT 
    GGAATAAGAG ATTTTCAATG CTTTTGAAAG ATTCTTTAAA GCAAGAAGTT 
    ATTTCCAGGG AGAAAAAAGA TAGACGGGAT TTTGATAAAC TTGCTGCTCT 
    GGCTACAACC CTGGGATTGT ATAGGTACAT CAATCATGCT GCTCCTTTCT 
    TTCTTCTTTC TCACTAGTAC AACCATTTCT GTTTCTTTTT TGCAGTCATG 
    CATATGCTAA GGTTGTTGTC TTCAGTAAGA TCCCACTCCC CAACTATAGG 
    TTTGATTTAG ATGACAAGAA GCCACAGAGG GAGGTATTAT CCGCTGCTCC 
    TCACTCTCTT CTCTTACACT TAACGCAAGA CGGCTTGTTT TTCTTTAAAG 
    AGCAGATATA TACAAAAATA TTTACAGGTG AATTTGCATA CTGACCTTCT 
    TCAAAGAGTT GAAGCT

AT2G01130.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).
Link
InterPro Scan - TAIR