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16-0549-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17941686 [Map]; Strand: c
      • AT4G38280.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Integral membrane protein hemolys...
        Distance: -110; Region: promoter
    Flanking Genome Sequence: 16-0549-1 - 5-prime edge 
    CTTTATAAAA CTNACAAAAT CCCGGTTATA CTGATAACGG TCGGTACGGG 
    ATTTTCCCAT CCTACTTTCA TCCGTGGACA AAGCATCGCA TTCTAAGGCC 
    CATATGCTTT TCAGTCACGT TGATACCAAA AAAACAAGTG AAGAACAACA 
    CCTCCGAGTG ANAAGATCTG TTGGTGAAAG ATCGCCGANC CGGNCNGANG 
    ACGANANAAN CCAGANATTC TATNTAATTA AACGACATGT GTGATAGNNN 
    GNNNAAACCT ACNNTTATGG TNAACTGANA ACAATTTTTA CTTATTTAGG 
    GGGGCTTNGA GAGCTTCATC ATGTATACTA CCTCCACCAT CTCTTCATTN 
    ATTAATTGAT GTCGCACCGT CGGAGATAAG GGTTGTCGTA CTCAACGTAC 
    TTGGACCAGT ACGGTTTGTA CTTGGCGAAT GCTAAACCCA GCCATGGCTT 
    GTAGTTCCCA TTGTAATGCA CTACCGCTGC ATTCTCTATT GCTGTTTGGT 
    TTAGCGCTGG GTCATATCCC AGCCCTAGTA CGTGCCAGCT CCTCTCCATT 
    GGATACGTCN GGTTGTAAAA TGTTATCANC CCCCGGTGGC ANCGATCCCA 
    GCCTTCCACA GTGTTCTGTC TTCATTCTTG CANCAATTNA TATATTAATT 
    GACACATCCA TNTCATCANC CCANANTATT NATATGNATT TCATNTNGAG 
    AANTTNCCNA NTGCCNTTCC NAGGCCTNGC CAATGGGGAT ANATCCCCNG 
    TAATGTTCCG GTNTCCTCCA CTTCTGTNAG GGCNAAACNT ANNTNATCCC 
    AAAAGGANAC CCAAAAGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17941724 [Map]; Strand: c
      • AT4G38280.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Integral membrane protein hemolys...
        Distance: -72; Region: promoter
    Flanking Genome Sequence: 16-0549-1 - 3-prime edge 
    CCTTTGTCTA TATACAGTGT GTACAGTGAG TAAAACTGCC CCGTGAATGC 
    ACATAATGGG CCTTACACTG GCCCATCATT GCTTTACTCT CCTCTCTAGC 
    TAGCGACGAG ATGAGTAAAA CGCCATCTCT CGGAGCGGAA CGGCTCTGCT 
    CTGCTCTTAT CCTCTGTCTG ATCCGTCTCC ATCACCATCT CCGTTCTACA 
    GGTAAATTGT TTTGCTTCGC GCTCCTCCGA TTGATTATTC ACTGATCAGA 
    TTCTAATAAT TATAATCCTG AGTCCTCGTT TGGTTGATGT TGAAGCACCG 
    CAGATCCTCT TTGAACTTGT TATTTGTAAG CTTCTTCTTA GTTTCTCCTT 
    AATCGCAGTG AAATGGAGAT TCCGGAGGGG ACATCAAAAG ATTCAGAAAA 
    GGCCAACGAA CAAGATTCAG TGTCATCAAT TGGGGCAAAG AAACCTCCAC 
    TGGAATCTCC AGCCACTACT AATGCTGCAA GCGGTCGA

AT4G38280.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Integral membrane protein hemolysin-III homolog (TAIR:AT2G45250.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR