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Mutant Lines
16-0561-1

16-0561-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 8314127 [Map]; Strand: w
- AT1G23400.1 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain-containing protein
  Distance: 0; Region: exon1 (CDS)
- AT1G23410.1 - [+] show detail - Ribosomal protein S27a / Ubiquitin family protein
  Distance: -797; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGC 
CGGATGGGAG AAAGGAATGT TGATTAAGCC TCATATGCAT GATAATCGTC 
AGGTTAATTT GGGTGAGTAT TGTTGTTGTA CTTGTCTTCA CTTAGGAGTT 
TTGATTTGGA TTTGGATTTG ATGTTTGTGT GTTTTATAGG TAGAGATGGA 
TTTACACATA ATATGTTGGA ATTGATACAT TCGCATTGGA AGAGACGACG 
TGTTTGTAAA GTTCGATGTA AAGGAGTTCC TACTGTGGAT ATGAATAACG 
TGTGTCGTGT TCTTGAGGTA TCTGTTTTAC TAGATACTTT GTTTAAGTGG 
AGATATAGAG GAAACTTGAA TGAAATATCA GAACCTGTAG AGGGTTTGTT 
TTGATAGATG TTTGGTGACA TGAGAAGTAG TTACTTTTGA ACTGTTAGAT 
TATTGTAGTA GTGATGGTTG ACTCTTCCAG CTTTTGTAAC TTTTTGCTCT 
TATNTAGGAA AAGACAGGAG GAGAGATCAT TCATANAGTT GGAGGNGTGG 
NGTACCTTTT CAGGGGTAGG AATTACAATT ACCGNACNCN TCCNCANNAC 
CCNNTGNTGT TTNTGGAAAC CANCANNNCC TNTTTNTTCN AANNTNNNNN 
NNNNCC

5 prime edge [+] show sequence

Chromosome: 1; Position: 8314191 [Map]; Strand: w
- AT1G23400.1 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain-containing protein
  Distance: 0; Region: exon1 (CDS)
- AT1G23410.1 - [+] show detail - Ribosomal protein S27a / Ubiquitin family protein
  Distance: -733; Region: promoter

CTCCCATCTC TTCAATGGCT CTCCTAAAAC CTCTTCTCTA TTCATTCCTT 
CCTTTGGATA CCTCCCAAAC GGTAACGGCC CAGGCATTTC TACATACTTA 
ACTCCAGATT TTCCCGCCGG CGGTGGATTA AAAGAATCAA ACAACGGAAT 
CTTCTTCTTC GATTTCTTCA ACGGTGCTTT CCCAGTCCAC GGTCTCGGCA 
TCGTCGGTGG AGCAAACGGC ATAAAAGCCG GTTCACGAAT CCCAACCGGT 
TTAACTTTCG GTGTCTCAGA ATAGCTGAAT TGAAACTCGA ACGGTGCACC 
GGGAAGCTGA TACGAGACGC CGGAATCGCC GATTAAGATT GTGCGGTCAC 
CGTCTGAGGA GATAACTCCT TCCTTAACCG GTTTGTAGTA TCTGGTTCGG 
TGATGCGGAA GCT

AT1G23400.1

Model type: Protein coding
Short Description: RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Curator Summary: Promotes the splicing of chloroplast group II introns.
Computational Description: CAF2; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT2G20020.1); Has 265 Blast hits to 223 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 261; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G23410.1

Model type: Protein coding
Short Description: Ribosomal protein S27a / Ubiquitin family protein
Computational Description: Ribosomal protein S27a / Ubiquitin family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2); Has 12704 Blast hits to 7404 proteins in 782 species: Archae - 114; Bacteria - 22; Metazoa - 5540; Fungi - 1414; Plants - 3101; Viruses - 186; Other Eukaryotes - 2327 (source: NCBI BLink).
Link: InterPro Scan - TAIR