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Mutant Lines
16-0564-1

16-0564-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 9500316 [Map]; Strand: c
- AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
  Distance: -3003; Region: intergenic
- AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
  Distance: 190; Region: intergenic

ATTGTACCAT ACATGATACA TCTATCTATT TTTAATTGAA AAGACATTGA 
ATTTGTGAGC GTACCTACGG GGTTTACATC TTTGGCATGG TTTTGTATTG 
TACCAAAATA GGTCNCGGCC ANNNGNCAAN GCATATCATA GNCATGCGTC 
TTATAGTTAN GTAAAGGTTG TTTTTCTCTT TATTAGCAAT GAATAAATCA 
GACTTTGGGT ACAGAAAACA ACAAGAATGT GTTGGAAATA TTTTACATAG 
CAAGTCACTC GTCATCAGCA ACATTTGCAT ATCCGCTGAT TCAATAGCCA 
AAGGGCGGAA GCGTTTTTGG CTTAACTTCG GCCAAAGCTG GAACAACCCT 
TCGGGTGAAG GAAAGAGCTT ATTAACTTCC TGCAGTAGAC ATTGTCTGGT 
CCACTTCCAA ACCATGAAGT ATCATCCAGC TATCCTACGT CGATGAGAAA 
ACATGTCGCT GCTGTTCCCC CATGCCGCTG CACTCTTTAA TTATATCATA 
AAGAGTTAAA GTTGTAAAGT TCCTAAAACT GTCTACTTTG CCAATTTTTT 
CTAATATGAA TGCGATGGAG GAAAAGAAGC TAATTTATTA TTGTACCATT 
TATGTCTCAA CTGTTACCAT ACTCCCTACT CTTCTAGTCT AAAAAGTACT 
TTGTACAGTA AGATCTATTA CTGACCTTCC GGNAANGAAG GAAGANAAAG 
NNNCNCCNCT TTCTCTCTCN NNCNNNACAA NNAAANGCAT NGNNGATCTT 
TTTNTTT

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 9500353 [Map]; Strand: c
  - AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
    Distance: -3040; Region: intergenic
  - AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
    Distance: 153; Region: intergenic
Flanking Genome Sequence: 16-0564-1 - 3-prime edge
```
ATACAATACA AAACCATGCC AAAGATGTTT TTCCAGAATA TGCTAAAGTG 
TGGCTTTTTG AAACATTTAT TCTTTCAGGA AAAGCGAAAT GTTCAAAACA 
AACGCAGAGT TGGAGAATT
```

AT4G16880.1

Model type: Protein coding
Short Description: Leucine-rich repeat (LRR) family protein
Computational Description: Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16890.1

Model type: Protein coding
Short Description: disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary: Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description: SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link: InterPro Scan - TAIR