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16-0569-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14785308 [Map]; Strand: c
      • AT2G35070.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: polle...
        Distance: 598; Region: intergenic
      • AT2G35075.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -1374; Region: intergenic
    Flanking Genome Sequence: 16-0569-1 - 5-prime edge 
    TTNANATNAG GGGCTACGGA TGCGTGGCTN ATCATACNGC AGANANCAAT 
    ATNAATGTCG CTNANANTCC AAGGCATNNG CGNANGAGAN GAANACCNGN 
    CNATGNNGTG AANNNCGCTG ANNGTACATG AAGAATATNT NTCAGGGTTC 
    ATTAATCNAT CNCATGGNTG ANGNAGGTGG CAGAANATNG TCTGACCTGT 
    TTTTTAATTT AAGTTTAAAA GCTACNAGGN GGGGCCGAAN ACCACGCGNG 
    CCCNGNTAAA CNNNACTCNG AGGNNNNGNT GTNGTGTNTC NNCTAANNNN 
    NGAAGGGGCG TNNCTNGAGN GCGNGGNTAN NCNGCNNCGC GCCNCNCNNN 
    NCTCTNNNNA NNCNNCNCCT TCCNTCCCCC CTCCCCGNNN TANGCNNNNA 
    CNNCCCNNTT NTNTCNTTCG CTCTTGNCTA NTNTNTTAGG NTNNGNTNGA 
    TTNGGCTNNN ANGTTTNNCN NNNTCGTCNC TTNNCGNGNN NATGNTNGNA 
    GGNNNGCGNG GCGNGGNNNC GNCACNGAGA GAGAGCCNNN GNTCNNTNCT 
    GNNNNTCATN NTTNTAATCC TTGNNCTTCT GNCNNGAGTN GCCCNANCNN 
    CGNTACNAAT CCNNNTCNNN CATTTAGANN NNNATNANAA TTNNNCNANN 
    NNGATTTCNC NATTCNANNG NCTGNATTNN CTTCNGTGAT NCNGCAGNNT 
    NTNTNNNANA CNGCGCNCNN TNCNCCCNNC CGACNCNNNN NNNGNATCGN 
    GNTCGAGNAC NCTACNNACA NNGNNCAAAC NNCCNNNGTC GGNATAAGGA 
    NGAATAGNNN AANNAAAAAA NAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23434740 [Map]; Strand: c
      • AT3G63460.3 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 0; Region: exon11 (CDS)
      • AT3G63460.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 0; Region: exon11 (CDS)
      • AT3G63460.2 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: 16-0569-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTGCAGGG 
    GCCCTTGCGT GACACGATAC AAGCTTTCCC CCAAATCCAA AAGATGCACC 
    AACCGGGCGC TTATACCATT TTGGTGCTTT TAAAGGAGCT GCATAGAGAG 
    GAATATAAGA AGTAATGTTG GTCCTGAAGC TTTTCATCTT CCAGCATAAA 
    AATGATAGAA GTAATCAACG GTAAACAAAC GGTTCAGATT GGGTAAATGG 
    AATTACCAGT ACCAAAATTA TTCTCTTCAA CACCATAGCG ACTGCAACCC 
    TGCACCAAAG CGTTGAATAC GTTTTTTTAA TCCATTCTAG GAGGGGAGAA 
    GGGAGATC

AT2G35070.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube development, pollen development; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1640) (TAIR:AT2G35090.1); Has 62 Blast hits to 62 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35075.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63460.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36264 Blast hits to 25632 proteins in 1258 species: Archae - 42; Bacteria - 5004; Metazoa - 13161; Fungi - 7258; Plants - 4512; Viruses - 551; Other Eukaryotes - 5736 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63460.2

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36280 Blast hits to 25623 proteins in 1259 species: Archae - 42; Bacteria - 4996; Metazoa - 13160; Fungi - 7289; Plants - 4519; Viruses - 551; Other Eukaryotes - 5723 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63460.3

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1).
Link
InterPro Scan - TAIR