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16-0575-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11585349 [Map]; Strand: w
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 4802; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 1167; Region: intergenic
    Flanking Genome Sequence: 16-0575-1 - 5-prime edge 
    GTNAAAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC ATCAAGAGTT TACGTTGCGA AATCAGCTAT 
    TTATGTGATT CTTCGACACA AAGAACACGT AGATTTACGA TTATGCCCTT 
    ATGCGTATAT GCTCGAACGG TGTTATTTTC AAAATTGTGT TTCCCGCTTT 
    GGAGATATTT AGTTAGAATC CCATTAAAAA CTTTGGAGAT AATAGGTTCA 
    ATTTGTTCTC AAAAACTAGA GTTGAAGATG AACCCTTCGT TTAATTAGTA 
    GCAAATTATC ATCTGCTTGC TCTATTTTTT TTTTCNCCNT TTAATTAGTA 
    AATNTNCAAN CNTNGTTNAT TNAGTTNCCN TTTTTTTNCN TNCAATTNTN 
    TNTTTNCAAT NTAAATTAGG GAAATTTTNC AAAAATTTTT NGAAAANTCA 
    ANTTAANGAN AGAGANAAAT AANGCTCANN AATNTNTNTN GTTCNTAACA 
    AAAAAAAAAA AGTTNGGTNG ACAAAAAANC CAAATCGTNG ANCNCTNTTT 
    AAGNGAACNA NCNCCCCAAA ANAAGCCAGG NGGGCGGCTN TCTATAGTAT 
    ATNTCANAGG AGTCTTCTGA TCGCNTNTAA NAATGATTAN GGNGTTGCAA 
    AAAGTAAATG AAATCTTTAC NCTGATAAAA TCTTGGCCGG NGTNAAAAAG 
    CCCTATTTTT GGGCATAANG GACCCCNAAA ACAAANCTCT NTGCCTTTNG 
    GATNCAGGGT TCGGGAAANA AANGGGGAAA TTNAAATTTG CTTTNGAANA 
    AAAANTTTTG GGCNNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11585356 [Map]; Strand: w
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 4809; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 1160; Region: intergenic
    Flanking Genome Sequence: 16-0575-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCACTCTTCT TCCACAAATA AACCGTCAAC GAATATTCAA ATTTCAAAAT 
    TCATTTCTAA TTTCTTCAAA ACGAGTTTGA ATTTGAGTGG AGAAGCGATT 
    TTGTTCGTCT ATCTTCATCT GATTCTTTTC TCCGATCAAT TGATTCGTGT 
    TCAATGTCGT CTGATTCGTT GGGTTAGTTC AAATCGGGAT C

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR