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16-0588-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13590805 [Map]; Strand: c
      • AT3G33055.1 - [+] show detail - transposable element gene
        Distance: 6831; Region: intergenic
      • AT3G33058.1 - [+] show detail - transposable element gene
        Distance: -10995; Region: intergenic
    Flanking Genome Sequence: 16-0588-1 - 5-prime edge
    GGTAAAAACT AACAAAACAT GCAAGTCATA TTGGACTCCA AAACAGTAAC 
    CAACCTTCTT CTTTCTTCTC AAGGCTTTCT TGGTGTAGCC AAAGTCCATA
    TGAGTCTTTG GCTTTGTGTC TTCTAACAAG GATACAATTC TTACGCCTTT
    AAGATCTGAT AAGTTATTAT ATTCAATGAT TCACATGACA TCTAGTCATA
    TTCGACTTTT AAACACTAAC CAACCTTCTT CTTGCTTCTC AAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11579140 [Map]; Strand: w
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-0588-1 - 3-prime edge
    ACCTGGTTTT GATGCTCCAT TGGTGATCGG AATCATGATG ACGAAAGTAA 
    AAGTCATTTT GTGCTGCTTC AAAACTTTTA GCGAAGGAAG GGGAGACGCG
    ATGATACTCA AGTTGAGATC TGGAATTTTG GAGTCTTGGT AACCTTCTTT
    GGAGCTCCCC ATGTTATTGA CTTGACTTGT TGGAGAAGGA ATAGTAGAAA
    AGATGATTTT TCCTTGGTGC TACGAGATAT TGCTCGTGTT GGGTGTTGTT
    ATCCCGACTT TGAAATGTTA GCTGATAACG AGCTGTTAGC TCTGTTAACG
    AGCTGCGACC TAGGAAAGTT GCTAATGGGC TATTAGCTAA GAAAGTTGTA
    GATGAGCGGC TAGCTATGAA GACCGTTGAT GAGCTAGGAA GACTGTTGAT
    GAGTTTCCAC CAAGGCGACT TATTGATGAA CTCCTAGCTG TTGACGAGCT
    GTTAGGCGAG CAAACTGCGA GGTATGAAAG TTGTAGACGA GCCGTTTACT
    ACAAAAGCTG GGAAAATTGT AGACGAGTTG TTAGCTAGGC GAATTGCGAG
    CCACAAAAGC TGCAGACAAG CCGTTTACTA GACGAACTGC GAGCTAGGAA
    AACTACAGAC GAACTGGAGC TAGGAACACT ACAAACGATC TGTTAGGTAG
    GCGAACTACA ACTGTTGACT TATGTCGACC ACTCTTATCT TTCGGACTTT
    TATCCATATT AAGCACTTTT ATATCTTATT TTTCANACTT TTATCCATAT
    TANCACTT

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT3G33055.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.2e-282 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G33058.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.4e-112 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR