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16-0594-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1069067 [Map]; Strand: w
      • AT4G02425.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -282; Region: promoter
      • AT4G02430.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G02430.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 16-0594-1 - 3-prime edge 
    GATCACACAC AAAAAAAACT CATTGGGATA ACGATTAACC TAAGGAAAAC 
    TAAAGAGGTT TGATTGATCT TCTATATATG AACTTAAATT CCAGTAACGA 
    TTCCGATCAC CTGAGAGAAA ATTCCGATGG AAGAGAAGAA GAAGAAGAAG 
    AAAGGCGAAA ATTGAAATCT GACTAGGGCT TTCGAATACC ATAGAGATCA 
    TCACGTGAGT CACGTGACCG ACCGGGTACG TATTAGAATA CATTGTGTCT 
    TGACCGTATA AAATACATTT GACCCGTTTT GCAACAAATC GTAATCTTCA 
    ATCAAAAGCT CTTAAACCCA AAAGAACAAC TCCAAATCTT CACTACTCGA 
    TTTTCTCAAA GAACTTAAAA ACAACACAGA TCCATTCCCA ATTTCAGATT 
    CACCCATAAG GATTTTTTCA TTTTTCATTT CCGCTTTCTG TGATCTGGAA 
    AGTTGTTACC TTTATCAATG TTTCCGAAAC ATCTAGAGTC ATCACGAAGC 
    TCTATTGAAT CATGCACTTC ACAGCTTCTC TCATGGCGAC CATTTCACCG 
    CTCCAAAACC CTAGACTCAT CTGACCAACC ACCGCAGACC AATGGGTTTC 
    ACTCCTTTAC TCCCAAACGC CCTTGCTTCT CCGATCGATC CACTTCTTTC 
    ACCATCGAAG CTATGAGCCG TCTNTCACTC GCCGACGACG ACAATGGAGG 
    GAAGACATTA TCAGCTTCCA ATTACAGCAA TAGAGGAAGT TCAGGGTTAG 
    TAGCGAG

AT4G02425.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02430.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02430.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.2); Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR