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16-0596-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 349926 [Map]; Strand: c
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-0596-1 - 5-prime edge 
    ATATAATCTC CTGCAACACA AGCTGACTTT TTGCGCAAGC TAGGGCTAGC 
    GAATGCTGAG GTTGCGTTTC TTGGATCTCA AGCTATCTCC ATAACACATG 
    TTACAGAGAA ACACNGGAGG GCACAGCTTC ATCGTCTTCG ATGGAATTGC 
    AAAGTGTGTG GTGCCAAACC TTGCAAGCAT CACAAGCCAC CATTCTCTCA 
    CCATCATCAT CTCTAGCTCC GCATTTGCAG TCAACGGTCC AGTCATCAAA 
    TCCGCCTTCA TACCTTAACT CTGTGCCTAT GTCCAGACCA AACCCTTTCA 
    CCATAAACTC TGTATTCCCT TGTGATTTTA GACTCACGTT GTCGTCTAGC 
    TTCTCGAGAT ACCTGTTTCT TATCTCCAAC ACTTCAAATG TCTCTGTTAT 
    GCAGTAAGTG TCCCTCAGAA CTTTCTCTGC TGCAGATTTC AGTTCTCTGA 
    TGGTTGCGTT TTCCGGAACA GCCACGAGGT CACCAGGGGG TAATAACCGA 
    GTGAAGTCTC TGAGTAGTTC TTCATGATTG GGAAGAACCT GGCAGCTAAC 
    TGTTAAATGA TTTTGTTCCT GGTAAGACCA TTCTTTTACA AAGCTCTTGC 
    ACTTCAAGAT AACCTGANAC GCTTCACTGT ATAAGTCTGA ATCAGGATAA 
    GTTAACAAGA NATTCTGATN TANATGAGAA TATNATCGAC GGACTCANTC 
    CAGGANNGNA NATGNNCATT CACTGGNTTC CTGCGGNTTN NTTTNCTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 350043 [Map]; Strand: c
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 16-0596-1 - 3-prime edge 
    ATTATATATC ACCCATTATT ATGGTCAAAA CTTACCAACC ATAGCCATAG 
    ATCTAATTTT ATAATTAAGA CTTTTTTGGC ATAAAATTTT ATCTGCATAA 
    ATATATGTTT ATGTAAATAC AATCCGCACA TTTTTCTCCA ATTATTATGC 
    TCCAAACATT GAAAACAACT CTTTATTTAA ATTACATTTT GAAAAAAAAA 
    ANCATCATCA AATNNGGGTN TNTNNGTCCA TATNTNCTGG ATCTTTCTNA 
    AAATTNATTT TTTCTNGATT TTTTNCAGTN TNTNTAAATN AANCTTNCTA 
    GTTTTNTTAT TTGGATTNCA NGAATTTTTA TTTATTTTGG GNAAAANGGG 
    AAATTTTNTN CCATTTTNGA TTNGGGACAN AAGTTCCAAA NAAANGTAAA 
    ANCGGNTAAA NNCCCTNCAN AAAATTTAAN ACANTTTTNC TNCTCAAAAA 
    NATTCGGATC GAANCNTAGG GAAAAAGGGC CAAGNCNCAA NGGGAANCCC 
    CGNTTCCNAN TTNCCNNCCC GGGNCGTNNA CCNCNCGGCC CNAANTNGGA 
    NNCCNNNNNG NGGNGGCCNN NANGNTNNNT TNNGGGGNCC GNNCCNNAAA 
    NCCNNAANAA NNAAGGGNNN ANTTNTCCNA ANCTNNCNCN NNNAAANCNT 
    NNNNNNTNTG GGNNNCNNNT TNNANNNTNN NGGNAACCNG GCNNNNNNCC 
    CNNGGNCNNN CCNNCCNNNN NGNCCCNNNN CCNNNNCNCC NNNNGGNNNN 
    NGNANNNNNN NC

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR