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16-0611-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 41257 [Map]; Strand: w
    Flanking Genome Sequence: 16-0611-1 - 5-prime edge 
    CCCATTAGGA TTACGTCTAG TTTTGTCACC TGTGGAGTTG TCTGAGATTA 
    CATATCCCCC CTTCACCACT ACCTCGACCG AAGTTCCAGG TAGATGAGGC 
    AGCTTTTGTC TGGACAAAGC CAGGATCGAA GGCCTCTTTC TGTTCTCTAC 
    AGCAACTTTG GAGGCACGCG CAGTCAAAGA TATCGGAAGG AGACCCATAT 
    CACTATGGGC CCAAAAGCCC ATATTGGAAA TGTCCGTTTA ATCACGAGTT 
    ATTTGTTAGC TTTATATGAC ACCGTTGGAG GAAAAAGGAA ATGGAAGTAA 
    AAAATCACAA GAACAATGGT ATTTGTATGG TTTGAGATTT ATCTATATGT 
    ATAAACTTAA GACTGGATAT GCATGGGTTG CATGTTTTTT ATTTACGTAC 
    TATTTAGGAA TATTATGATA AATGTAGAGG TTTAATTTCA AAGATCATTA 
    TTATAAACAT CTTTTTTTTT TTTTTTTAAA AANNAAAANG GNTGGGGGGN 
    AANCCCCNNN TTTTTTTNGG NCCNAAANCC CNNNNNNNNA NTTTNNNNNN 
    NNNCCAAGGG NNTTTNNAAN TTNGNAACCT TA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 41141 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -952; Region: promoter
      • AT4G00114.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-0611-1 - 3-prime edge 
    CTAATGGGGA CAGGGTCGGA GCTAGAGATA GCTGCAAAGG CTGGAGAGAA 
    GCTAAGAGAA GAAAGAAAAG CAGTGAGAGT AGTGTCATTG GTGAGTTGGG 
    AGCTGTTTGA TGAACAAAGA GAAGAATACA AAGAAAGTGT GTTACCTTGA 
    GAGGTTTCAG CAAGAGTGAG CATTGAAGCA GGGTCGACCT TTGGGTGGGA 
    GAAGATGGTT GGCTCCAAAA GAAAAGCCAT CGGTGTAGAC AGTTTTGGAG 
    CAAGTGCACC AGCCAATGTG CTCTACAGGA AATTTGGACT CACCGTGGAT 
    ACGGTTATTG CAGCCGCTAA AGACTTTTGT TAAGCTAAGC TCTCTTTTAC 
    ACATCATAAA GACATTTTCT ACGTTGTTCA AGTGTGCCTT TCCACATACA 
    TTTACCCGGA CTCACTCACT AGTCACTCAC TAGTCACTAT AAATCAATAT 
    CGTTATGTTT TTATCTTACA ATAAGTGAAT TTGAAGAATA AAATAGAGCT 
    TTGATGGATA TTACTATTAT ATATGCGGTC TAGTAGATGC GTGTTGTTAT 
    TATATTATTC CTTGAAGATT ACTCTTTGCT TTTTTGTACC CCATGGATAA 
    ATGTGCCTTG GTATTAAGTT GCAAATTTGA TTTAATTAAT CCCTAACATG 
    TTACTAGTTA GAGTTTGCAC GTGACGATCT TGGGCAGCAC CTAAACATGT 
    NTTGTGTGCG TAATTTTGTA ATAAGTAAGT GCNTCNAGTT TGATGAATCA 
    NTNTTGAATG ATAATTCNAN G

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00114.1

Model type
Pseudogene
Curator Summary
pseudogene of transketolase
Link
InterPro Scan - TAIR