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16-0620-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19569471 [Map]; Strand: c
      • AT2G47770.1 - [+] show detail - TSPO(outer membrane tryptophan-rich sensory protein)-related
        Distance: 0; Region: exon1 (3UTR)
      • AT2G47780.1 - [+] show detail - Rubber elongation factor protein (REF)
        Distance: -578; Region: promoter
    Flanking Genome Sequence: 16-0620-1 - 5-prime edge 
    GTTTCGGCGA CATAAAAGTA AAACGATCGC CTTTTAAGAA TCTCACAGTT 
    TGATTTCAGA CCAACGCTTA AAACTTCTAC AATATCACAT TATTTCTCAA 
    GTATATCATG TTCATGTCTA TTACTCCACA ATGACCAGAC CATTGGATCG 
    CAAAGACATC TTTTATGGTA TATATCACAA AAAACAAAAA CAACAAGAAA 
    CACTCATATG ACTCAGACTC TACAAACATC ATCGTATAGC GTTTACAGAT 
    CTCACGCGAC TGCAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19569587 [Map]; Strand: c
      • AT2G47780.1 - [+] show detail - Rubber elongation factor protein (REF)
        Distance: -462; Region: promoter
    Flanking Genome Sequence: 16-0620-1 - 3-prime edge 
    GCCGAAACGG AACAAATTCA AACGGTAAAG CCAACTATAC TTTGATCAGT 
    TTTGGGTTGG GCCGTTGACA CTGTTTTGTG GGCTTCTCAG TCAGTGGTAA 
    ACCTAAAATT AATATAGGAA CTCGAGGATT AGGGCCCAAT CCATTTTAAC 
    ACNGTGATGA TATCATGTAA GGTTTGGAGG GAATATACAA AAAGTGGATG 
    AATGATAGCG AACGAGAGGT CCTTGTGCTT TTTTGATTTA CCCTCGAGAC 
    TCGTGCCGAC GGAGTGGCCG TGGCTTTCGT GCAACAGTCT CGACCCATAC 
    CTCGACACGT GTTGAAAACG GTCCATTAAG AGTAAGACAT CTGTCAATAG 
    GACAGCTGTC CTAGAGGTCA CTCGTCTCTC ACAATCCAAT CCCTTTCGCT 
    TAAATTAAAA CTAAAATGGA GCATGGCAGC AACATGCCAC GTGGCTCACC 
    AGTTTCAAAT CTGAGCCGTC CGGTGTGATA TAAGTCTTTT TAAAGAGAGA 
    GAGAGCGGTT CGTTTGTCTG CAACGGCACC AAGTCTTTGA CAATGGCTGA 
    AGATGAAATA GTAGTCGAAG AAGAGCAATC ACAGCCACAG GAGATTACTC 
    CAGTTCCACC ATCTTCTTCG TCTTCGCCTT CGTTAGTGGT GGAAGACGAC 
    GATGAGATGA AGCTCAAGCA CTTGGAATT

AT2G47770.1

Model type
Protein coding
Short Description
TSPO(outer membrane tryptophan-rich sensory protein)-related
Curator Summary
Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks.
Computational Description
TSPO(outer membrane tryptophan-rich sensory protein)-related (TSPO); CONTAINS InterPro DOMAIN/s: TspO/MBR-related protein (InterPro:IPR004307); Has 567 Blast hits to 567 proteins in 188 species: Archae - 24; Bacteria - 226; Metazoa - 151; Fungi - 6; Plants - 53; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47780.1

Model type
Protein coding
Short Description
Rubber elongation factor protein (REF)
Computational Description
Rubber elongation factor protein (REF); CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT3G05500.1); Has 126 Blast hits to 126 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR