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16-0622-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13102069 [Map]; Strand: w
      • AT3G32110.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-0622-1 - 5-prime edge 
    GTACTAGGCG CGAGACGTCT CTCGGCTTAT GCCCAGTAGG CCTATGTATA 
    ATTTAAAGAG GGAGTTCTAG GCTCTGTATA AAAAATAAGT GAGGCCAATT 
    CTGCAGAAAC NGGATTAACA AAGAGACATT TGGGGAAGTT ATTGAAAGAG 
    TTTCGTCGAG ATTAGCAGGC TGGAAAGGTC GTATGTTGAG CTTCGCAGGG 
    CGGCTCACAC TCACCAATGA TNAATTTTCA GTTTGATAAC TAACTGTCTA 
    GCCTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10319661 [Map]; Strand: w
      • AT5G28350.1 - [+] show detail - Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotid...
        Distance: -478; Region: promoter
      • AT5G28350.2 - [+] show detail - Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotid...
        Distance: -544; Region: promoter
    2. Chromosome: 5; Position: 10335721 [Map]; Strand: c
      • AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -1150; Region: intergenic
      • AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 3002; Region: intergenic
    3. Chromosome: 3; Position: 3122659 [Map]; Strand: c
      • AT3G10114.1 - [+] show detail
        Distance: 2634; Region: intergenic
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: -3364; Region: intergenic
    Flanking Genome Sequence: 16-0622-1 - 3-prime edge 
    CCTAGTACAC GCCGAATACT TTTATTTATA AAGCCGAGCT CAGTCTCGCA 
    CTTAACATCT AACCCGAACT TAGAAAAAAT CGGCTGTGAC GTCAGGTGAA 
    AACCAGTCCG CCCGAAAGCC GAGCTCAAAG CT

AT3G10114.1

Model type
Pseudogene
Curator Summary
pseudogene of glycosyl hydrolase family 81 protein
Link
InterPro Scan - TAIR

AT3G10116.1

Model type
Protein coding
Short Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Computational Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G32110.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.9e-52 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)
Link
InterPro Scan - TAIR

AT5G28350.1

Model type
Protein coding
Short Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor
Computational Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28350.2

Model type
Protein coding
Short Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor
Computational Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28370.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28380.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR