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16-0629-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9937550 [Map]; Strand: w
      • AT1G28335.1 - [+] show detail - low-molecular-weight cysteine-rich 31
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 16-0629-1 - 5-prime edge 
    GGNANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC GCTAAGGAGT GCACATACAT TTTACCTCCA 
    TGCCTTTTTA ACTTTTTTGT ATTTACAGTA AAAATCAAAC CATATTTATA 
    ATAAGTGTTG TATTGTAATA GAATAAACCA TATGTTCGGA ATTTATGGTC 
    TGACGGTTTG TACTAGTGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9737850 [Map]; Strand: w
      • AT1G27940.1 - [+] show detail - P-glycoprotein 13
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 16-0629-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AATCAGAAAC CGCTGTCATT GAAAATCTTT ATATTCAAGA ATGCTTTGTC 
    TTTTCATGAA ATGAAAATCA CAAGTTCATA ACAATTCGGT GCTTTGTCTT 
    TTCAAGAATG CTCTGTACTT GGTCTACCTT AGGATTGGTC AATTTTGTAT 
    CAGCNTTGGA TCGGTACGTT TCCATGTACA TTGGTGATAT GTTTTTATAA 
    TGTTATAAAC TTTTATCTGT TTTTAATGTT TTTAGTTGGG ATGGTTTATT 
    ATTGGCAGGA GTTTCTTGTT GGATGCAAAC AGGGGAAAGA CAAACAGCAC 
    GATTGCGTAT AAATTATCTC AAATCGATAT TAGCAAAAGA CATTACTTTC 
    TTTGATACTG AAGCTAGAGA TTCAAATCTC ATTTTTCACA TATCAAGCGA 
    TGCTATCTTG GTTCAAGATG CAATTGGCGA TAAGGTACTT TTACTAATAT 
    ATGAATT

AT1G27940.1

Model type
Protein coding
Short Description
P-glycoprotein 13
Computational Description
P-glycoprotein 13 (PGP13); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 14 (TAIR:AT1G28010.1); Has 859453 Blast hits to 396267 proteins in 4182 species: Archae - 14855; Bacteria - 669138; Metazoa - 18079; Fungi - 12603; Plants - 9342; Viruses - 61; Other Eukaryotes - 135375 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28335.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 31
Curator Summary
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description
low-molecular-weight cysteine-rich 31 (LCR31); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR