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16-0634-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30044000 [Map]; Strand: c
      • AT1G79860.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 12
        Distance: 0; Region: exon1 (CDS)
      • AT1G79870.1 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: -746; Region: promoter
      • AT1G79870.2 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: -746; Region: promoter
    Flanking Genome Sequence: 16-0634-1 - 3-prime edge 
    ATCCGGTGGC AGCCTCATCT AAACCGGTCT CGACGCTGAG ACTCTTGTTG 
    TGTCTCGTAG CACTATTGTT GTCGTTGTTC CTCCATTTGA AATTGAAGAG 
    CCTGCTCCTA TAGGTTTCCT GTTCTTGTTC CGAAGCACGA ACCATTCCTG 
    GTCTCTTGAT GGCAATAGAG AATTACAGAG GAGAGAGAGA GAAAGAGAGA 
    GGATCAAATG GGCCTCTCTT GAGATGGGGA GAATCAAAAG GGAAGGAGAA 
    GCTAATCGAG CCGCAAAACA ATAAAGGGTA ATTGTTACAG TGATTTTGGC 
    TTTGAGAAAA TTGTGGAGCT TTCTTCTTTT GCTTCCTTTT TTTGGAAGAT 
    GGGACGTGGG GCGCATGTTT CAGACCACAC CTCTTAATTT TAACTAATCA 
    TTATTTAGGA TTTTGAACAT TGATAATTAG AGATAGAGAG CCGTTTAAAT 
    TATAAAATGT TATCATATAG TAACATACTA AAATGTGATT ACACCCTTGT 
    CACTGGATTC CCTAAACATG CAATGTCAAC GGGGAATCTG CTACGTTTCC 
    ATACACATAC AGTGTATGTC TTCTTGTGTT TGTATCATGT TCATGAATCC 
    TACAACAATT TGCATGAATA TCATCAAACG TGCAATGTTG TCTTTAAACA 
    TAAGTCATGA TTTCGGAACC AAGAGGAAAA CTTGAAAAGG GTCATTTAGT 
    GGCCCATAAA AAGCGGATAA TATCAATTAT GGGCCCAAAA ATAGGCCCAT 
    CTT

AT1G79860.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 12
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth.
Computational Description
RHO guanyl-nucleotide exchange factor 12 (ROPGEF12); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1); Has 305 Blast hits to 303 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79870.1

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 29704 Blast hits to 29696 proteins in 2729 species: Archae - 468; Bacteria - 18164; Metazoa - 733; Fungi - 1180; Plants - 594; Viruses - 5; Other Eukaryotes - 8560 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79870.2

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1).
Link
InterPro Scan - TAIR