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16-0670-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28453315 [Map]; Strand: c
      • AT1G75780.1 - [+] show detail - tubulin beta-1 chain
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0670-1 - 5-prime edge 
    ACTATGGATA GTATCAGATC TGGTCCCTAC GGTCAGATTT TCCGTCCTGA 
    TAACTTCGTC TTTGGTCAAT CCGGTGCCGG AAATAATTGG GCGAAAGGTC 
    ATTATACTGA AGGTGCNTGA ACTTATTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28453431 [Map]; Strand: c
      • AT1G75780.1 - [+] show detail - tubulin beta-1 chain
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0670-1 - 3-prime edge 
    TCCATAGTAC CAGGCTCGAG ATCCATGAGA ACAGCACGAG GAACGTAACG 
    ACCACCAGAA GCT

AT1G75780.1

Model type
Protein coding
Short Description
tubulin beta-1 chain
Curator Summary
beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses
Computational Description
tubulin beta-1 chain (TUB1); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to light stimulus, unidimensional cell growth; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-5 chain (TAIR:AT1G20010.1); Has 23671 Blast hits to 23575 proteins in 4891 species: Archae - 36; Bacteria - 42; Metazoa - 4470; Fungi - 14216; Plants - 1549; Viruses - 0; Other Eukaryotes - 3358 (source: NCBI BLink).
Link
InterPro Scan - TAIR