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16-0673-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • abnormal (PATO:0000460)
    (Seed yield::seed shape)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 292089 [Map]; Strand: w
      • AT3G01810.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon8 (CDS)
      • AT3G01810.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon8 (CDS)
      • AT3G01810.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 16-0673-1 - 5-prime edge 
    CTTTTACTTG ATATAATATA TTTCTTCTCA TTGTGAAGGT TTGCCCGATG 
    TTTGGTGCCC CGTTGATTAA GAGAGTGTTG AATAATTTTG TCCCAGATGA 
    GTTTTGCCCT GACCCAGTTC CTGATGCTGT ACNTGAAATC TCTTGAATCC 
    GAGGTGAGAC CATTTTTATA ATGATGGATC TAAGGCTAAG CAGCTAATTT 
    TGCTAACGGA AACGTGATGG CCCTTGTAGG AAGAAGCTGA GAAGAGTATC 
    ATCACAAGCT ATCCATGCAC TGCACCTTCT CCAGTGTACT GTCCACCTTC 
    ACGGACTTCA ATCTCCACCA TCATTGGAAA CTTTGGACAG CCTCAAGCGC 
    CGCAGTTAAG CAGAATCAGG TCTTCAATTA CAAGAAAAGC GTACACAAGC 
    GATGACGAGC TTGATGAGCT GAGTTCACCG TTGGCTGTTG TTGTTCTTCA 
    ACAAGCAGGT TCTAAGAAGA TCAATAATGG TGATGCAGAT GAGACAATCA 
    GGTATCAACT TCTCAGGGAG TGTTGGATGA ACGGCGAATG ATCAGACATT 
    GATGTGTTTT GTCTTTTAGT TTCCACTTGT GACTGTTTGT AAATGTCTCT 
    TATGTGTCAA AAATCTTTGT CAGTTGGTTG TTTTTGGTGT TGCCGCCATG 
    TATAGAATGA TGACAGTAGT AACAGTACTG GAGTTTGAGC TTGACATATA 
    TACAATTTGA TAACACGCAN ATTGACCACT GAAGAATCAA AACCGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 292019 [Map]; Strand: w
      • AT3G01810.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: intron7 (CDS)
      • AT3G01810.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: intron7 (CDS)
      • AT3G01810.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 16-0673-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    AAAGAAAGAA GACTATATAA AAAAAAGTGT TGTGAGTTTT ATGTTGCATT 
    TGCACCTCTT TTCTCACAGA ACTGTTGAGG AGCATATCTT TTGGAAGCAT 
    CATTAGATCG CTTAACGCCT TGAGAAGATT GAATGTCTTG AACGATTTTT 
    CAACATAGCT ATTCTCATCG CTGCTGTCAT CATCTTCGTC ATCAATGCCG 
    AACAGATCAG TGAGCCACCT TGACCAGTTT CCTATCTGTT TGAAATTAGA 
    AATGCATGAG CTTTACAGAG ACCACAGTAT AATAAGCATT GCCAAGCTAT 
    TGAGTTGAGT ACACTGACCG AGTTTTTCAG CTGGGCACCA GAACCAAAAC 
    TTGATGTTGT AGAAGGAATT GGCAAGACTC TCAAGTCTGC AATGGGATCA 
    GATACAGGGT CTGTTGGGAA ATTGTCATCA GAATCACGAA GGATAGCATT 
    GAACATAGCA ACATCTAGCC GAGCCACACA CTGTTCCATT ATCTGCGTTA 
    CAAATCGTGG ACATTCGTTT GTGAAATCAA GAGTAAGGTC CAAAAGTGAC 
    AAACTCAAAA GGAGAAATGT TTACCAGACG CGCAGGTATG GGCAAGCAGC 
    CACATTCATG CCCACTACCT CGCAGAGGGC ATAAACGTTC GTGTGCCTCC 
    CTGAAAGCCT TTTTCCAAAG CTCTAATGAG AAGTCACCTA GTTCTTGGTT 
    CGTACTACTC GGAGTCCTAC CAAAAGTTTT CTTTGATGCA GAGCCATTTN 
    CTTTATCAAC TCTCT

AT3G01810.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1327 Blast hits to 470 proteins in 132 species: Archae - 2; Bacteria - 131; Metazoa - 139; Fungi - 114; Plants - 114; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01810.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1232 Blast hits to 443 proteins in 120 species: Archae - 2; Bacteria - 119; Metazoa - 136; Fungi - 117; Plants - 114; Viruses - 0; Other Eukaryotes - 744 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01810.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2).
Link
InterPro Scan - TAIR