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16-0702-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24585936 [Map]; Strand: c
      • AT1G66040.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-0702-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    GTGTCTACAA AACACAAAAG AACAATACAT CCATTAGTCT GCTACTTGAA 
    TACACTAATC ATCATTATCA AGTATACAAA TAAACTAGCG ATTCTACTAC 
    ACTTATGTGT ACTCATCACA AGATTAAACA AGGCATTAAC ACAGACCACA 
    AGCATAAATT CGCGATTCTA CTACTATTAT TAACAATAAT CACAAGATAT 
    AACACGTCAT TAACACAAGT CACAAGCATA AATTAGCGAT TTAGTAGGGC 
    TTATGTGTAT TGATCACAAG ATCTAACAAG TCATTAACAC AAGTCACAAG 
    CATAAATTAG CGAGTGAAAA CGAACCGTGA CAGGTCTCTC TGGCAATTGA 
    ATGCAAATAG AACAAAAGAT TTCTAACTTC TTCTTTTCTT CATCATCGAC 
    ACCATCGTCA CCACCACCAC TCATCAGTCT CTGCCTCTTT TTGGCTTTCT 
    CAGCTTCGGT CAAAGTCACA TCAGCCTGAA TCGCACGGAT CGCAGCAACG 
    AGAACTGAAC CGGAAGATTC AGGTCCGGAG ATTCCGGTAC CCGGAGCGGC 
    GGAGGGAACA ACAACGCCGG AGCAATCGGG ACACTCCCAG TCTCCAGTGG 
    AAGAAGCGAG TGATTCAGGA AGGAGACACG ACACGTGCCA TGGAGTGACA 
    CAGGTGCCAC ACGTGAGAGT CTCTTCTGAC GGANGATTCA CCTGGCACCG 
    CATACATACA CCGTCTNCGT CGCAAGGAAG CTGAGTTTGA ATCGCCATTG 
    TTGAACGAGT GA

AT1G66040.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Curator Summary
predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.
Computational Description
VARIANT IN METHYLATION 4 (VIM4); FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66050.1); Has 6297 Blast hits to 5041 proteins in 427 species: Archae - 0; Bacteria - 14; Metazoa - 4562; Fungi - 413; Plants - 874; Viruses - 19; Other Eukaryotes - 415 (source: NCBI BLink).
Link
InterPro Scan - TAIR