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Mutant Lines
16-0708-1

16-0708-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 16776312 [Map]; Strand: w
- AT2G40150.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 28
  Distance: 0; Region: exon3 (CDS)

TCTCGATGGA CTCTGGCATT ATTATACGGT CGATTATACT GTGCTTTTCC 
GGATCGTCTG AATTTGATTC CACCAAAAAT GGCGCCCAAT AAAACTCCAC 
CGTCGCGTTA TAGTCCTATT TTAAATTTCA GTTTTGCATA TCCCAAGAAA 
GTAAGAAACT ATAAAAATAA TGTCATTAGT GTCAGTGTCA CACAAGTGGA 
TTAATGTTTA TTACCTGGAT TTTGAAAACA GTGAGTGAAC CGGTCTGGTT 
TAAGCT

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 16776428 [Map]; Strand: w
  - AT2G40150.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 28
    Distance: 0; Region: exon3 (CDS)
  - AT2G40160.1 - [+] show detail - Plant protein of unknown function (DUF828)
    Distance: -962; Region: promoter
  - AT2G40160.2 - [+] show detail - Plant protein of unknown function (DUF828)
    Distance: -962; Region: promoter
Flanking Genome Sequence: 16-0708-1 - 5-prime edge
```
CATCGAGAAG CATGGAGTCA ACTGGATAGG CGTTGACTTT CTTGTCTTCA 
ATAGTTACAT CTGGTGGATG AATACTGTCT CCATCAAAGT CCTGTAAGTA 
GTAATGTTAT AGTATACACA CTCACACATA CTTTATGTAT TGAATATCTG 
AGGATTGAAG ATTTGTGATG ATGGAAACAG ACGTGGATC
```

AT2G40150.1

Model type: Protein coding
Short Description: TRICHOME BIREFRINGENCE-LIKE 28
Curator Summary: Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description: TRICHOME BIREFRINGENCE-LIKE 28 (TBL28); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 1332 Blast hits to 1305 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1332; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G40160.1

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF828)
Curator Summary: Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description: TBL30; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, hypocotyl, root, leaf; EXPRESSED DURING: LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 1330 Blast hits to 1307 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1330; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G40160.2

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF828)
Curator Summary: Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description: TBL30; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, hypocotyl, root, leaf; EXPRESSED DURING: LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1).
Link: InterPro Scan - TAIR