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Mutant Lines
16-0728-1

16-0728-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 1256374 [Map]; Strand: w
- AT3G04620.1 - [+] show detail - Alba DNA/RNA-binding protein
  Distance: 0; Region: intron1 (CDS)

GGTGGACACA AAGTATCAAA TAGATAAAGA TCGATCCTGA ATCAATACTA 
TAAGTATCCA AAAACAGATC GGAAACAAAA TCCAGGCGAA TACTGATTGT 
TCGTCTCAAG ATACTAAAAC GATGTTTCGT TAACNTGAAT CTACAATCTT 
AAAATCAAGC GGATCTCGAA CTCTAGTAAA CAGAATCAGT CAAAATTGAG 
AAAAAGGAAG ACTCGTTTGA TCTGAAAAAC CGTCGATCCG GTAATGAATT 
TAGGTTTCCG ATCATTACCT TGGCGAGATT AACGTAGAAG AACAATGGCT 
TCTTGGTGTT GGAAACTTGG ATC

3 prime edge [+] show sequence

Chromosome: 3; Position: 1598607 [Map]; Strand: c
- AT3G05520.1 - [+] show detail - Subunits of heterodimeric actin filament capping protein Capz superfamily
  Distance: 0; Region: exon1 (5UTR)
- AT3G05520.2 - [+] show detail - Subunits of heterodimeric actin filament capping protein Capz superfamily
  Distance: 0; Region: exon1 (5UTR)

ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCTAGAG 
AAAGCTATGG CGGACGAAGA AGATGAGTTA CTGGAGACAG AACTAAGTTA 
CGACCAGAAA AAGGAAATCG CCAAGTGGTT TTTCCTCAAC GCTCCCGCTG 
GAGAAATCAA TTACGTCGCT AAAGGTACTT AGATGCATCN GTACATACAT 
ATTTCCGACG ATTCCTCCGA TGTGTCCCTC AATGAGAAGG CGAGATCATA 
GATTCTCCGT GTGCATTTTG TTTTGTTTTG AGCATCATGC GTGATTTGAC 
ATCTTTGTTT CGATTTCTGT AAATCTTTTG GACTTCTGAC AGATTTAAAG 
GCGGTTTTGA GCGATGAGGA AGTGTACAAT GAAGCAGCCA TGGAAGCATT 
TCCAGTGTAC AACAAAACTC ACATGATTTG CCTTGAAATG CCCAGTGGAG 
CTGGTGATGT GAGTTAGCAT CTTATTCTGG TTCTATTCTA CTTAGTTGAA 
ATTTTCATTT GTTGTGTCAT AGGAGTTGAA TTGTCGAACA TTATTGACTT 
GTAATCTCTG TTATGTGGAA TTAGCTATTC TCATGATCTA TTAAGATTCT 
TAGAGAAATG TGGCTAATGA AAAGGGGAAG AGCTTTGAAC AATACTTAGT 
GGATCACTCA NAAGGAGAGA ACTCAAGTAT ACTTTGNGGT ATTTGTCTCT 
CTTAAATGTA TATTGCTTTC CTANGGGTTT TGCTTCGCTA GCTGCAAAGA 
NGCTANAGAT TAGTCGATCT TAAAATTANG GGATTTTAAA TTCTANTAGG 
AGTTCTTCAA TTTCNCTGTT GGA

AT3G04620.1

Model type: Protein coding
Short Description: Alba DNA/RNA-binding protein
Computational Description: Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G29250.1); Has 160 Blast hits to 160 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G05520.1

Model type: Protein coding
Short Description: Subunits of heterodimeric actin filament capping protein Capz superfamily
Computational Description: Subunits of heterodimeric actin filament capping protein Capz superfamily; FUNCTIONS IN: actin binding; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: nucleus, F-actin capping protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-actin capping protein, alpha subunit, actin binding (InterPro:IPR018315), F-actin capping protein, alpha subunit (InterPro:IPR002189), F-actin capping protein, alpha subunit, conserved site (InterPro:IPR017865); Has 649 Blast hits to 643 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 391; Fungi - 148; Plants - 37; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G05520.2

Model type: Protein coding
Short Description: Subunits of heterodimeric actin filament capping protein Capz superfamily
Computational Description: Subunits of heterodimeric actin filament capping protein Capz superfamily; FUNCTIONS IN: actin binding; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: F-actin capping protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-actin capping protein, alpha subunit, actin binding (InterPro:IPR018315), F-actin capping protein, alpha subunit (InterPro:IPR002189), F-actin capping protein, alpha subunit, conserved site (InterPro:IPR017865); Has 69 Blast hits to 69 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 15; Plants - 8; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR