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16-0745-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19561053 [Map]; Strand: c
      • AT2G47750.1 - [+] show detail - putative indole-3-acetic acid-amido synthetase GH3.9
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-0745-1 - 5-prime edge 
    CGTGGAACCA CTCTCCAAAC CATCTGACGT CGTTTTCACT CTCTTGCCTA 
    ACATGTGCTA CTTCGAGTTT ATCCCTCTCG GCAAAAACGG GACACTCTCT 
    TTTGATCTAG ACGACGATGA ACAAGTCCCC TGTGATAAAG TCGTTGACTT 
    GGTCAATGTC AAACTCGGCC GCTACTATGA ACTGGTCGTC ACAACTTTCG 
    CAGGTATTTA AAGAAACGTT CTTTTAATTA GTGTTTTGGA TTGGTTGATG 
    ATTGATTCAT GCGCAAGCAG GATTGTACCG TTACCGAATC GGCGACGTTC 
    TTCAAGTGGC GGGTTTCTAC AACGAAGCAC CACAGTTCCG GTTTATCTGC 
    AGGAGAAACG TGGTTCTAAG CATCGACTTA GACAAAACCA ACGAAGAAGA 
    TCTACACAGG AGCATAACGT TAGCCAAGAA GAAGCTACCA NNCNNGGCCG 
    NNNACCANN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19561169 [Map]; Strand: c
      • AT2G47750.1 - [+] show detail - putative indole-3-acetic acid-amido synthetase GH3.9
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-0745-1 - 3-prime edge 
    GTTCCACGTT GACTCCAAAG TAAGTCTCAG AGGAAGCATA CATTGGACAA 
    ACCAATGGAA TCTTCCCCTG GCTAAAAAAC TCAAGTGCAG GTATGTATTG 
    AGCCATTGAG CCCGTCACTA CTGCTTCGAT GAACTTTGCC TTAGGCCAGA 
    GCTGACACAG AATCCCTTTC CACGACGACC GCCCACAGAT CTCTTCGATC 
    TCGCTAGCTA ACTCTGGATT CGGCGACATT AAAAGACAAG ACATTGCCAT 
    TTGGCAACCT GGATCGGTGA TCATGGGGTT GAGACTACCG GTGCGGATGT 
    CTTCACAGAG CTGACTCCAT TTCTTCTCGA GATAAGAGAT TGCACGGAGA 
    AACGCTGAAG CAAAGACTGC TCCTAAACGC ATCACCTTGT GACGGTGAAT 
    CAGACCGGCT AGTAACTGAC AGTACATGCT TTGGTTGCTG TCTTCACAAA 
    GGATGGTTTG GATAGGACTG GTTAAGTCGT TGAATGGATC ATAAGGTCTG 
    CACTGGAAAT GCTTGCTTTT GTAGTAACTA GTGAGGACAG CTCTGATTGG 
    TAAACCACAA GGAGTTGATG TTTCAGCCTT TACGAAATTT AGGTACATTG 
    CTTTTCCTTT GTCAAGTCCT GTTATGTACC TGTTGGTAAA AAGGTTAAAA 
    AACAGAGCAN GAAGAAGATG GTAAAAGAGG TAACCTCAAC GGGNATTNAA 
    GATTCTTTAG GTTTAGTGNG GGCATGTTCA AAATTCTTAA ANAATCTTTA 
    GTGGGGANAT CAAATTGGCG NGNG

AT2G47750.1

Model type
Protein coding
Short Description
putative indole-3-acetic acid-amido synthetase GH3.9
Curator Summary
Encodes GH3.9, a member of the GH3 family auxin-responsive genes. gh3.9-1 mutants had greater primary root length, increased sensitivity to indole-3-acetic acid (IAA)-mediated root growth inhibition, but no obvious effects on apical dominance or leaf morphology.
Computational Description
putative indole-3-acetic acid-amido synthetase GH3.9 (GH3.9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: chloroplast envelope; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G28130.1); Has 1429 Blast hits to 1301 proteins in 228 species: Archae - 0; Bacteria - 485; Metazoa - 53; Fungi - 2; Plants - 681; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Link
InterPro Scan - TAIR