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16-0797-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17899523 [Map]; Strand: c
      • AT1G48420.1 - [+] show detail - D-cysteine desulfhydrase
        Distance: -719; Region: promoter
      • AT1G48422.1 - [+] show detail
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: 16-0797-1 - 5-prime edge
    CATACACCGT GGAAAAATCT ACAAACATAC CATGTACCAC AACCANGNGA 
    GNGTCGACAG AAAAAATGTN CGAGACATAT ATTGTCACAT AACCAATAAG
    TGTATATGTT GTCTCCCACC AACTGCAATA CTTTTATGCN GTAGATCGAA
    GATGTGAGTG TATCCATGAT ATATAAGTGG TGTAAACTTA TATATTGGAT
    ATGAAATTTC AAAAGACATT AATTATGAAA TTGTTATTGT TTTTGAATAA
    TGAACTTAGT TATACTATTG AAGTACTTGG TACTTAACCA ATTTTTATCA
    ATTTGGCAAA ATTGACCAAC TTTTTTTTAT TGTAACTCTA ATCCAAAAAT
    GGGAAAATAT CGTTTTATAC TTGAACATTA AAAAAATAGT TATTCAATAC
    GTGGACTTTG CTAACGATGG TTATCGGATT CGTTAACGCC AGTTAACGTC
    TTGGAAATTT TGGTCTGGTC AATATTTGGT TTTGTGTTAA ATACCGGGTC
    AACGTTTTTA TCATATTTTA TTTAACCGAC CTAAAAGTTC ACGTNTTGAA
    TGATCATTTT TTAAAAAATT CATGGTNTAA AAAAATATTT TTTTTTGGNN
    GANAATNANA AAAACTTTNN CCCNTTTTTN TTNNNAATNA CTTANCTACC
    GAAATTNNTT NCCGGNNAAC NGAAAAGGAN NNATNTTAAA GNNTTGNTN
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17899639 [Map]; Strand: c
      • AT1G48420.1 - [+] show detail - D-cysteine desulfhydrase
        Distance: -835; Region: promoter
      • AT1G48422.1 - [+] show detail
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: 16-0797-1 - 3-prime edge
    GGTGTATGAC TTAGGAGGAG GAGTACACTC ACAAGTTCCA TTGTTGCAAT 
    ATGCTAGACC TTTGGCACAA GGCAGAAGAT GGCACTCATC GTTTCTTTGG
    CACTTGGCTT CCACTAGATC TTGTCCTTCA CATGTATAAG CAATGTTAGT
    TTAACAAGAT TTGTCATAAA GAACAAAATG ATTTATAAGA TTAGTTTCCA
    ATCATTTGTT TTTTCTTACA TTTTTATTTT CTTAGGCTGA TTCTAAAGAT
    CACTTTTAAA CAAAACAAAG GATC

AT1G48420.1

Model type
Protein coding
Short Description
D-cysteine desulfhydrase
Curator Summary
Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. There is conflicting evidence on its 1-aminocyclopropane-1-carboxylate deaminase activity. Involved in regulating ethylene levels.
Computational Description
D-cysteine desulfhydrase (D-CDES); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate deaminase activity, D-cysteine desulfhydrase activity, cobalt ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, ethylene biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Pyridoxal phosphate-dependent deaminase (InterPro:IPR005966); BEST Arabidopsis thaliana protein match is: Pyridoxal-5'-phosphate-dependent enzyme family protein (TAIR:AT3G26115.1); Has 2814 Blast hits to 2813 proteins in 938 species: Archae - 31; Bacteria - 1992; Metazoa - 30; Fungi - 102; Plants - 101; Viruses - 0; Other Eukaryotes - 558 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G48422.1

Model type
Pseudogene
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Link
InterPro Scan - TAIR