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16-0828-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8517843 [Map]; Strand: c
      • AT3G23660.1 - [+] show detail - Sec23/Sec24 protein transport family protein
        Distance: -53; Region: promoter
      • AT3G23660.2 - [+] show detail - Sec23/Sec24 protein transport family protein
        Distance: -53; Region: promoter
    Flanking Genome Sequence: 16-0828-1 - 5-prime edge 
    CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATACGG GATAACTCTA ACTTAGAGTT CCTAAAAAAT AACGCCAAAG 
    AATTTTGAGA TTTTTCAATT TCTTCATTAA GGAAAAAAAA AAAAAAACCC 
    NAATTNNTNG GNNNGGNNNA AAANGCCCCC CCCGGGGGNG GGNANCCCCN 
    GGGNCCCTNG GGGGGGGGNT TTNCCCCCCC CNGNGGGGGN NNNTTTTNNA 
    AANNCNTTTT TTNCNGGGGG GGGGNGNCGG NCCCCCNCNG GGGGGGGNNN 
    NNNGGNGGGG GGGGGGGGGN NTNCCCCCCC CCCCCCCCCC CNCCCNNNTN 
    NNNG

AT3G23660.1

Model type
Protein coding
Short Description
Sec23/Sec24 protein transport family protein
Computational Description
Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2); Has 1418 Blast hits to 1403 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 392; Plants - 312; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23660.2

Model type
Protein coding
Short Description
Sec23/Sec24 protein transport family protein
Computational Description
Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2).
Link
InterPro Scan - TAIR