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16-0842-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 115311 [Map]; Strand: w
      • AT4G00260.1 - [+] show detail - Transcriptional factor B3 family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 16-0842-1 - 3-prime edge 
    ATCCCNCAAC NNCTNGGTCC NAACAGNGTT ACATGGAAAG CCAAGTCACT 
    CTNTTGTCGT GAAAACANCA NTGTCNCCGA TTCGAAGATC NTGTGATGAC 
    AGCGAACATC GTTTCCAACC CGTCAGGTGA GTCTCTGGCC ATCTATGGTT 
    NACGTTCCCN GGTTNTNTTT GACAGCCGTC TGATCTCAGN TTCGCCGTGC 
    TTCTGCTCAT ATCTTCCTTC TATATACTTC AAGAAGAAGG CTACAGGAAT 
    TGTCTGAAGC AACATGCAAA TACAAAACCA GACTCATCTT TAGCTTCTCA 
    GAGAGACATA GACAGAGATA GAAGAAGGGA AAGAGCGAGA AAGAGAGTAC 
    CAAGGAGGCG TGGAAGCCAG GAAGAAGAGG CTTGAAGAAA TGTTGATGCG 
    CCATTTTCAA AATCTTGAGA AGTCCTAAAT GGCTAAATCT GAAAGTCGAC 
    GGTACAGTTT CTTGAAGGAA CGAGTGTAAT AAACTCCAAC TTGAAGATGA 
    CAGTTTATTG GTGTTGTTGA AACTATGAGA GACCATTGAT ATACTCAAGA 
    AGAGACCATT GAAGAGACTT TTATTGGGGT TAAACACTCT GGTTCGGTTC 
    AGGACTTTCA NAATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 115427 [Map]; Strand: w
      • AT4G00260.1 - [+] show detail - Transcriptional factor B3 family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 16-0842-1 - 5-prime edge 
    TGTGGGATTC AATATGGTTC GTGTTCAGTC GAAAAGAACA ACCTCGGTGA 
    CGGTGAGTTG TGTTCTGTCT CTGGCTCTTC AAGAAACGTG GTTTGCTTTT 
    GGAATGTGGA TCAGTGAGTA GAGATAACCA GTTTGACTAT ATAACACTTA 
    TTTTTCAGAG AAAAAGAAAG TGAAGGAGAA TCCAAATGGA GAAGCAGAGT 
    CTTCTTCACG AGATCCCTCT TGTTTTGTGG CTAATGTTGC GCCTTCGAGT 
    CTACGTTATG ACTTGATGGT ATTACCANCC CGGGCCGNCG ACCACNCNGC 
    CCATATATAG GGTCTGAACT CATGTTGTAT TCTAATGAAT TTTTCAGAGA 
    TTTCCAAGGG GTTTTGTGAG GGATAATGGT GTAGTCGGAT C

AT4G00260.1

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein
Computational Description
maternal effect embryo arrest 45 (MEE45); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 539 Blast hits to 263 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR