Home
Mutant Lines
16-0873-1

16-0873-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 56886 [Map]; Strand: w
- AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -3437; Region: intergenic
- AT4G00150.1 - [+] show detail - GRAS family transcription factor
  Distance: 313; Region: intergenic

GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATTNTA AAGGAGAAAA AGCAAACCTT TGTTNCGTCG 
GAGAAAAAAA AAGGTTAGAA ACTGGCGCAC ACAAAAATGT ATTGNGGNCC 
AAATAAATAA AATAATACAA GACCCATGTG ACATCATGGA GACATATGTT 
TATAAATTAA AAATAGACCC CTCGCAAAGA CACAAACCAC AACAAACGTC 
TAACCATTAT ATAATCATAT AATCACAATA ATGAGCAGTA GCTTTCTGCC 
TCGCATCAAA ATCAACACCC CATTCATTTT TAATTANAAA AATATAGTAT 
TGAGCTAATC CAAGCATTAT TNTATCACGT NATTTAGTCG ATCAAAAATA 
ATCCCCACAA TTAATATATA TNGAATGNGT TNTACAATAA GTGTTNGATA 
ANCANACAAT NANTNANCTN NTCACAAAAA TNNATGNTNG CGTGANAAAC 
CCGGGCNNTA ANCNACNNGN GCCNGANCAN AATGNGCTCA AAATCTTNAA 
NTTTGGGGTT TNGAANAAAT TGACTTACGG GGNCNNTTTT TTNAATAATG 
CGAAACTCCG GGGGAAATCA GGAGGAGCGA CATNTCCATG CTGAAACTCC 
GACGAGTTNT GTCCANCCCG GGCCGNNNCC NNCNTGCCCT AA

3 prime edge [+] show sequence

Chromosome: 4; Position: 56941 [Map]; Strand: w
- AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -3492; Region: intergenic
- AT4G00150.1 - [+] show detail - GRAS family transcription factor
  Distance: 258; Region: intergenic

TTTTNTTTNN NAAAAANNAA TNAANANANN CAANAAANAN AACNTTTGTN 
NANNNNTTTT TAAGCGGANG GAGTNTTTAA CTNGACCGNT ACCGACCGNT 
TTCATCCNTN ANACGGTCCA TACGCATTAC ATATATAATG CGCCCATCTG 
CTNTACGCAT TAACNTGCAT NTCNCTATAG AAATATTTCA NAAACAAACC 
AAGNGTATAC AANACATCAA CATGTANNTT TTGGGGNTTT AANGNNAAAG 
ACNNCANTNC AANAAAAAGA TNACNAGCNA ANNNANGTTA NACAANCCAA 
CAGNATTTAA GGCTNACTCA NTNTATGAAA ACANNATTNA GGATAATNAT 
TNAGANGGNA NANGNANACA NGNNANGGAC CTAATCACNN GCCAGGACCG 
ANAAACCANG NGNGTGGCNN TAGNNNAGGA TNANGANGGG GNNANCCGAG 
GNNGAGAGGC NNNNNCNNAN CANNATATNN NGNNCCNAGT NGGNNAGGNG 
GTNNACCNAN ANANNAGGCN ANNCNGTNAN NNGCNANNCN NGGNTGGNCC 
CNTCCGTTCN GNNGCNNAAA NAAGGAGAGG AGNGGNGAAA CANNGNAACA 
TCACNNCCTA NNCNACCAGA AAGAANGANN NAANCNNAAC CNNCNNAACA 
AAANAGCGCA CCGANAANCC NGCATNNTNN NNCNNNNNCA CCNANGAGGA 
NCNNANTCGG CNNNNNNGTN ANTNCAANGC NCANANNNNG TGNAACNGCA 
ANGANAAGAC CCNCGNGNCN NNCAANGAAN ACAACGGAGG ACCCCATCCN 
ANANNANAAN AACCNNNANN ACACACANNC NNACACCCTN CCGCNCATCC 
GTNAANNNCC GCNAGANNNN TNNANNNNGN CCGGAGAGNC NCCNCGNNTA 
NCATAACCCC GCCTNNGNCC NCNCGANTGA TNCAANNCCT

AT4G00140.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00150.1

Model type: Protein coding
Short Description: GRAS family transcription factor
Computational Description: HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR