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16-0877-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8640148 [Map]; Strand: w
      • AT1G24350.1 - [+] show detail - Acid phosphatase/vanadium-dependent haloperoxidase-related protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G24350.2 - [+] show detail - Acid phosphatase/vanadium-dependent haloperoxidase-related protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G24350.3 - [+] show detail - Acid phosphatase/vanadium-dependent haloperoxidase-related protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G24360.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -434; Region: promoter
    Flanking Genome Sequence: 16-0877-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATATAGA TTTAATCGGA GTCTGATCCA AACAGAGATA TAAAGAGAGA
    ACGTACCAGG AGGTGAAGAG TTTGATGAAT TGAGCGATAG TGAAAGAGGT
    GACCGGCGGA AATGAGAGGA TAATTCGTGA AAATGGAGAA ATAATGAGTG
    GAAGACGAAG ACGTAGCCGT GGCTGTAGAA TCCTCCATGG CCGATGATGG
    ATCTAGTCAG GCTTTAAATC GTGCTAGCGA AAGAAGAAGA AGAAAATGAC
    ACCGAAACGA CAATGATCCA TAAAACGTCG ACTAATTCCC TTTCAAACTC
    CAATGGCGTC TACGTCTACC GTTCAATCCT CTTTGTCTTT CTTTTTTTTT
    CTTTGACCAA TTTTTTTTTT AANCCNNGNN CCCCAAANNT TTTTTTTNTN
    CANTTCCCCN CTTCCAANNA ANTTTNANCC GTTTCCNNTN CAAANCCCNA
    NTCCCTNGGN NAGTTNTTTT CGGNAAANCN ANTNTCNTTT TTTTCNACAA
    CCNGCCCNAC NTTTAANCNN NACTTTTACC CCCTGGNCAN AACTTNGTTG
    GTTTCNCTTT TTTGAAATTN TTTTTNTTTT NTTTGGTTGG ACCNAAACCT
    ANAACAAANT TAANACTTTT CTTTNTGGTT NTTNTCCNCN GGGNNNATNT
    TTCCNAGGTT CCCTTGNCCG GTTTCCTTTA ACAACAAATT CCCCTTGGCC
    NCCNCCGTNA ANNCCNAAAC TTATTTCCTT GAAGCNGNCA N
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8640114 [Map]; Strand: w
      • AT1G24350.1 - [+] show detail - Acid phosphatase/vanadium-dependent haloperoxidase-related protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G24350.2 - [+] show detail - Acid phosphatase/vanadium-dependent haloperoxidase-related protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G24350.3 - [+] show detail - Acid phosphatase/vanadium-dependent haloperoxidase-related protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G24360.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -468; Region: promoter
    Flanking Genome Sequence: 16-0877-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    CAATCTTTGG TTCGAAACGG TACATAGGAA ATTATAGTAT ACGTTAGATG
    AGAAAGGATC TTTACATGGT TTCCTAGATT CTGTAGGTAT AGGGAACGGA
    GATGGGATCT CAAACAGCTT ATTGGGTCTG GAGGAATGCC TTCTTCGCAT
    TCAGCGACCG TTACAGCTCT CGCTGTAGCT ATTGGTTTAC AAGAAGGCTT
    TGGTGGATCA CATTTTGCCA TTGCTTTGAT TTTGGCATCT GTTGTAAGTT
    GGATACTTTC TCTAGTTTAA TCAAATTGGC TATTAAGGAA TCAAGTGACG
    ATTAATATGT GAGTGGTTTG GGTTGGTAGG TGATGTATGA TGCTACCGGT
    GTTAGATTAC ATGCTGGTCG TCAAGCTGAG GTTTGTTCAT TGCTGCTCTA
    ACCTTTCCTT TGTTTCATCT TCTAACTTGA CTGGTTTGAT AAAAGAACCA
    CTATTGGTTT TGTCATGATG CATTTGAGCT CTGGTATCCT GATCTCTGGG
    GTCTGATTCA TTTTTCAGGT TCTCAATCAN ATTGTATATG AACTTCCTGC
    AAAACATCCG CTGGCTGAAA GCANACCTTT GCGGGAACTT CTTGGTCATA
    CCCCTCCCCA GGTNTGTANA CNTATGACTT GAAAAANGTC TTTTCATATN
    TGACTACCAG ANANTGAAAA TTCTTTTANC TGNTNCNTTN NANCAAGATG
    NTACNNAGTT NNGG

AT1G24350.1

Model type
Protein coding
Short Description
Acid phosphatase/vanadium-dependent haloperoxidase-related protein
Computational Description
Acid phosphatase/vanadium-dependent haloperoxidase-related protein; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: Acid phosphatase/vanadium-dependent haloperoxidase-related protein (TAIR:AT1G67600.1); Has 1124 Blast hits to 1124 proteins in 413 species: Archae - 0; Bacteria - 739; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24350.2

Model type
Protein coding
Short Description
Acid phosphatase/vanadium-dependent haloperoxidase-related protein
Computational Description
Acid phosphatase/vanadium-dependent haloperoxidase-related protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: Acid phosphatase/vanadium-dependent haloperoxidase-related protein (TAIR:AT1G67600.1); Has 1118 Blast hits to 1118 proteins in 412 species: Archae - 0; Bacteria - 737; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24350.3

Model type
Protein coding
Short Description
Acid phosphatase/vanadium-dependent haloperoxidase-related protein
Computational Description
Acid phosphatase/vanadium-dependent haloperoxidase-related protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: Acid phosphatase/vanadium-dependent haloperoxidase-related protein (TAIR:AT1G67600.1).
Link
InterPro Scan - TAIR

AT1G24360.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: 3-oxoacyl-[acyl-carrier-protein] reductase activity, copper ion binding; INVOLVED IN: oxidation reduction, metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxoacyl-(acyl-carrier-protein) reductase (InterPro:IPR011284), Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29370.1); Has 133396 Blast hits to 132816 proteins in 3924 species: Archae - 1008; Bacteria - 83642; Metazoa - 7884; Fungi - 7548; Plants - 3127; Viruses - 5; Other Eukaryotes - 30182 (source: NCBI BLink).
Link
InterPro Scan - TAIR