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16-0886-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8775947 [Map]; Strand: c
      • AT1G24822.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron2 (CDS)
      • AT1G24880.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G24880.2 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G24880.3 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 16-0886-1 - 5-prime edge 
    GAGCCAGATA GGGTTTGAGA AATCGAAGAG AGGTAATGAT TATAGCAGTT 
    TAGTGTTTCT CGATGGAGAG AGAGAGAGAG AGAGAGAGAG AGAGANNGNN 
    TTTTTTATTT GGGAGAGANA CAGAGNNGCG NNCGAGGGGT GTNTATNNNG 
    NNCTCTCTNN ATNNACTTAT TTTTNTTNTG AGTCNNTGTT NCNCCCTTGN 
    CCCCCTCTCA CATCTNATAG GGTNTNAAAC ACTNGNCTTN TGTCNNAAAN 
    AGCTCTCGGN NTCTCTTTTT TNTNCGGGGA CACAACACAN ATAATNATAT 
    AATACNCCTA TTTNTTTNTN NGGNNGAGAN ANCCCTTGTT NNGNGCTGNA 
    AAANTCNTTG NACTCTCTCA TATNAGNGGA CTTATANATN CCCCTTNNTG 
    GGGANATCNC NNGNGCTTTG NAGANAACTT ANNACACACA TCTGTGTATA 
    TATNNCATTG TGTCTATATN TGTAGAGATC TNTGTAAAAA NGTNTATGNG 
    CGAAANTCTT TTNAAAAAAT ANNNNCTNTC AAAAGCCCNC ACNCTGTCTG 
    TGTGNAGATA CACTGTGCTC TCATTGGGTC TNGAAGCGCN NGNATCANTN 
    TGNAGAGAAA ATNCNCCCTN TCTNTTCAAG AGNGAATNGN TGGTTNNGAA 
    NACTCGTGTC ACCCNGGGTT TNTTCCTACA TANNCCCCCA ANAATCNNCT 
    TTCNCNANAA NNNTCGNGC

AT1G24822.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25097.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24880.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24880.2

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1).
Link
InterPro Scan - TAIR

AT1G24880.3

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1).
Link
InterPro Scan - TAIR