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16-0887-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19242510 [Map]; Strand: w
      • AT2G46810.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon4 (3UTR)
      • AT2G46820.2 - [+] show detail - photosystem I P subunit
        Distance: -986; Region: promoter
    Flanking Genome Sequence: 16-0887-1 - 5-prime edge
    GGGAAAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCACCCNG GGATAAAACT AACAAATTCT GTCACAAGCT GTGGTCCTTC
    TTTGGATAGA TTCATAATGA AAGTTNGACC CCTCTCTCTT TTTNTATTGT
    CTTTTTGTTT TGCTTTTGCC TCTCTCTCGG GGTTTTGACN TTTTGTATCA
    TAAAACTAGA ATATAAAAGT NNACAAATTA TATTTATCTA TAAAATATTT
    TTATTTTATA GTTTACGATT GTTATTAAGT AACGTCCTCT TAAATTCGTC
    CCGCCAATCT GTCCCGTAAA AAAAACTCAC TGATTTTATT TATGATATGT
    TTATGAATCA TTGTCTAAAT ATTTTTTAAT TTTGTAGTAA TTAAATGCTA
    TCTAATATCT CTGCGATTNG ATGATTATAA TCGAATTATT ATAGTCATGT
    AGAAAAACAA TATCAAAAAT GATAATTTTG TAGTAATTAA ATGATATTAA
    ATATTTCANA AGTTTTATTT TANAAACTAN TNGGGTAGTT AATGNGGAGA
    GATTTTGGGA AGATTATCNN NTATTTAATT CAAAGATTTT CTTTCTAATT
    ATCAAAAACA ATTATTAANT GCNNNTGGCA GNCNCTGTAA ANAAATCCCA
    ACCCNCGGAT TTATTNNGCA AANNGNCTGC AAAAATGTAT NTATAAAANN
    AGGGGNGGGG GACNNAAATG GATGGGTTTN AAAAAANTAA NNNCTGNNNG
    GGNCAAATGA ATAAANCCNN TNNTGGGGGG GGNGGAAAAA N
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19278382 [Map]; Strand: c
      • AT2G46915.1 - [+] show detail - Protein of unknown function (DUF3754)
        Distance: -609; Region: promoter
      • AT2G46920.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon4 (CDS)
      • AT2G46920.2 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 16-0887-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGGTATTGA GCAGGATCGC CTTCAGGAAC GTTTTCGATG AACCAAGTCA
    CGTGAGCAAC AACCTCTTCG TTGCTGAAGT ATTCATACAA TCCATCCGAG
    GATAAAACCA TGAAACGATC GCTTGAAGTC AGTCTGTGAT GGACGGTACA
    CNGGTTCGCA TGTGATGTAC AGGGTCTGTT CCAATGTACT CTACTTGGAA
    CATCTCAAGC AAAGCT

AT2G46810.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1496 Blast hits to 1481 proteins in 142 species: Archae - 0; Bacteria - 20; Metazoa - 45; Fungi - 33; Plants - 1336; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46820.2

Model type
Protein coding
Short Description
photosystem I P subunit
Curator Summary
Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits.
Computational Description
photosystem I P subunit (PSI-P); FUNCTIONS IN: DNA binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46915.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3754)
Computational Description
Protein of unknown function (DUF3754); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3754 (InterPro:IPR022227); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3754) (TAIR:AT3G19340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46920.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Curator Summary
Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.
Computational Description
poltergeist (POL); FUNCTIONS IN: phospholipid binding, protein serine/threonine phosphatase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: poltergeist like 1 (TAIR:AT2G35350.1); Has 1941 Blast hits to 1802 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 295; Plants - 1017; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46920.2

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Curator Summary
Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.
Computational Description
poltergeist (POL); FUNCTIONS IN: phospholipid binding, protein serine/threonine phosphatase activity; INVOLVED IN: protein myristoylation, regulation of meristem structural organization, protein palmitoylation, regulation of transcription, maintenance of meristem identity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: poltergeist like 1 (TAIR:AT2G35350.1); Has 1941 Blast hits to 1802 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 295; Plants - 1017; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Link
InterPro Scan - TAIR