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16-0895-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Fruits (Siliques)::short)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 174136 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: -135; Region: promoter
    Flanking Genome Sequence: 16-0895-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGT ANATCTGGNT GCAGGTGAAA GNCAACATGN 
    ACATGTTTAA TCTAGGCCCA TTAAATATGA GGCCTATACT GNTTTTAAGC 
    CCATTACTCA TCATTTTTTA TTATTATATN TAATTNAATN TNTTNATTTT 
    ATTGACATTN CTGATAGATT AGCGGTTGCT ACTGACGCCG GAGAAGAGAG 
    ATGGCGAGAT CGTGCTCTAT CTGGACACCT GNTTTGATCT CACTTTCACC 
    TGTGACCGGA GAATCACCTA AAATTTCACG GCGCCGGGTG ATTTTAGCCA 
    CAAGTATAGG ATCTCCTCAG GTTCGTACAA GTACAACAGC TTTCGAAGAT 
    CCATATAGTT AGTTTTCTTT TCGTGGAGAA ATATGTTGTG CTATGTGTGT 
    CAATGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 174091 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: -180; Region: promoter
    Flanking Genome Sequence: 16-0895-1 - 3-prime edge 
    AGCAGATTAC AACAGATTTG NCGNANACAG AAGATCACAT ATTTTGNCTT 
    CANCATGAAC AATTTCCCGG AAACGTGTAG AAGCNACAAG ACTCTTTTTC 
    TCCTTNCTNA ATGACGATGT TNNTCTCTGG AAATCACTTG GTTNTCTNAA 
    GACCANACAA TANAACATTG TATGTCCCCA GCGAAGGCAT TATCTCTCGC 
    TCTCTNATCN CTCCTAATAT ATTCATTGCT TTCTCTGGAC TCCCTGCTGA 
    GATATAAACA TNCANCAGCG CANTNTAAGC AGCTAAACCC TTTTGATCAT 
    CCGGAAGTAA GTCGAAAACC TNTGCAGCTA AACGAGGTCT TCTCCCAAAC 
    CCGANCCTGT GGATNAACAT TGCTCCTTGG TANCAACCAA NCGAGTGTTG 
    GGCTTTCAGC AGCTCCTTGA CCACTTCAAT CACTTTAGGA AGCTCGNTNG 
    ATCTCAGAAA ATTACCAATT AACGCGAGAT ACGCTGACTT NTCGAGATGA 
    ATT

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01400.1

Model type
Protein coding
Computational Description
unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR