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16-0927-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2359377 [Map]; Strand: w
      • AT3G07370.1 - [+] show detail - carboxyl terminus of HSC70-interacting protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 16-0927-1 - 5-prime edge 
    CATCTTCATT AAGATGCTTG GAAACTACAC TACTTAGGTC TCAACGTTAC 
    GACTTAAACA ATCATGTCCA CCTGATAAAT TTTACAGAAA AAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2359261 [Map]; Strand: w
      • AT3G07370.1 - [+] show detail - carboxyl terminus of HSC70-interacting protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 16-0927-1 - 3-prime edge 
    TGAANATGNG AGGCACCNCN NGAATCTCCN TCTNNTNCCT TTTGAAAGAT 
    GTNTAATGTG GATACTTGAG GACACTTGNN TNACTTANAA AAATCACTAG 
    CAGATGGGTT GGTTTGTTTA TGCCATCAAA TACTTGCAAA CAAATTTTGG 
    TTTGATACCT GTTTCCTGTT AACTTCATGT AGCTACGTTT CATATAGGCT 
    TTAGATCTTG GAAGATGCTC GAATCCAACA GGATATATGG TAGAAGAAAT 
    ATGGGAAGAG CTTTCTAAAG CAAAATACAT GGAGTGGGAA CTGGTTTCTG 
    CAATGCGGTC ATGGGAACTG AATAGTTTGA AGTAGGTTCT GTAACTTTCT 
    TAATCCAGTG CTATCATTCG ACTTGGAACT GTGCTTTTGT GGCTTTATGG 
    AACTATTCAT GTTTGTGTTA GGGAAACTTG TGAGGCTGCT CTTAATCAAC 
    AACGTGCTTT ANATATGTCT CGAACAGAAG AGTCCTNANA CGAAGCNTAT 
    ACTGCCCNTN CTGANCGTNN GANAGCTCTT GAACNANTGT TTANNAANGC 
    TNCNNANANN ATNNCCAACT GNNGNGCNTN NAATNNTNTT NANNANCT

AT3G07370.1

Model type
Protein coding
Short Description
carboxyl terminus of HSC70-interacting protein
Curator Summary
Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment.
Computational Description
carboxyl terminus of HSC70-interacting protein (CHIP); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to salt stress, response to temperature stimulus, response to abscisic acid stimulus, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), U box domain (InterPro:IPR003613), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: protein phosphatase 5.2 (TAIR:AT2G42810.2); Has 6721 Blast hits to 5903 proteins in 442 species: Archae - 38; Bacteria - 482; Metazoa - 2236; Fungi - 1004; Plants - 1936; Viruses - 0; Other Eukaryotes - 1025 (source: NCBI BLink).
Link
InterPro Scan - TAIR