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16-0972-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30040571 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: intron9 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 16-0972-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATAGAC AAACTAAACG CACCTGGATT GCCACTGAGT 
    TGCCTCTGTC TTGTCCCTTG GATAAGTTTG CAATAGACTG AACATGAGCT 
    CCGTTTGACA AAGCATCCCA CTGATGATAT GTATCGTTAG ATAAATATAT 
    GAGTGGAAAC CGCTTTTCTT GTTTGCTTAA ATGTGTGTGA ATTTGACAAG 
    GTACCTCATG CCGACGAGCT TCATCTCTAA AGAAATCGAA GAGAAGAGCT 
    GGAGAAACAG GTAACCACAG CGAAGAAGAA GCGCAGACAA TGACTCCCGT 
    GGGCTCGCCA GGATCATGAA GGTTCTTCCT GGAAGAAACC CGCATGTCTT 
    GTCCAGTTTT GGTGGTGATT TTGGTCCATT GATGGTAGCT TGATGCAGCA 
    ATGGCGCGGT AGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30040628 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: intron9 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 16-0972-1 - 3-prime edge 
    TTCTCCTCCT CTAAATCTGT CTAGGCCTTG ATAATCTGAA TTTCTATACA 
    TTTCCAGACA GTGAAATCGA GAGAAAAGAG CATATGGGTG CTGCAAGACA 
    GCAGCACTAA CTCGTATGAG TCGGTGGTGG TATACGCTCC CGTAGATATA 
    AACACNGACA CAGCTGGTGC TCGCGGGACA TGATCCAAGC AACATCCAAA 
    TCCTCCCCTC TGGATTCTCA ATCATACCTG ATGGAGTAGA GTCACGGCCA 
    CTGGTAATAA CGTCTACACA AGACGACAGA AACAGCCAAG GAGGGTCGCT 
    CCTGACACTC GCCCTCCAAA CCCTCATCAA CCCTTCTCCT GCAGCAAAGC 
    TGAATATGGA GTCTGTGGAA TCCGTGACAA ACCTCGTCTC AGTCACACTA 
    CACAACATTA AGAGAAGTCT ACAAATCGAA GATTGCTGAT GACAAGTCAC 
    AGCAGATATT ATTTACCTAT ATATAATTAT ATGATAATGT ATAGCAGCAG 
    TGCATTAAAG TTTTGTACAA AAACGACCAG CTCTCTCTTC TCCAATCCTA 
    TTATTATCCA ACACCTTTTT GGTCCATTCC ATTGGCNAAT GAACCATAAC 
    AAGAGGAGCA AGAACCGTAG AATTAGCAGA AACAAAATTC GGATCACTGA 
    GACCACAAGC ACACNGTAGC CACNGAAACA TATTAATTCA CATTCTAAAT 
    GTAACTGGAG GTGAAGATGA AGTAAGAACA AACAATTGGT NGNTCGG

AT1G79840.1

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR