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16-1062-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9452631 [Map]; Strand: w
      • AT1G27200.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: -881; Region: promoter
    Flanking Genome Sequence: 16-1062-1 - 5-prime edge 
    CCTTGATAAA ACTAACAAAA TCCGGTTATA CTGATAACTG GTCGGTACGG 
    GATTTNCCCA TNNTANTTNC ATCCNGTCNA NCANNCAGNN CCACGGANCA 
    AANCGGTCGA CACACGGNCC TGGGNNGCNG NCNTCGGNCC TTGNACAGGN 
    NNNNGCCTGC ANGNGNTGGA TCANCCAGTN CAGAGNNNTG TGGGNGANCG 
    GNNTTNATTN NGGNNGCGCC AGAANAACTA NNCNGCNNNT TCCANCCCGG 
    GNNNTNANAN ATGCTTGATA GNTAAGTTTG NCCTTTATAA CCGACTTCTA 
    GTATATATTT TTTTCCATNN CATTTTTAAG CTATTATTGA NATTGATACG 
    TGNGTCNNGN NAAATNATTG NGATTGNNAT GTATATTGTA AGTTATACAT 
    AAATACATAC TATATAATAA AGATATGCTT TTAATATAAT AAAATTATTA 
    TGATTGTTAT GGAGTTTGTG AAATTATTGT GATTGTTATG GATTTTGTTA 
    GTTATACATT AAGTATATGA TATATAAAAA AAATGACNAA CGAAAGAAAA 
    GAGAATGCAA TGAATTATTT ATTGATCCCA ATTAGTNATG TATGTTNGNG 
    GNNAGCCAAT GAGATATGTN GCAAATNNAG NAAACANGGG TTGTNTANTN 
    GAAGNNAATN AAANNGGGGN NNNNTNTNNN NAAAAAAANN NNNNGNNNNN 
    TGGNNTTNNN NTTANAAANA NNTNNTNTNG GNGTTNAAAA ANNNNNNTNN 
    NNAGGGTTNN NGNNANNAAN NNNGNNNNNN NNGNGNNNNN TNNNNNGNNN 
    NGNGNNNTNA NNNNNNGNNN GNNNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9452602 [Map]; Strand: w
      • AT1G27200.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: -852; Region: promoter
    Flanking Genome Sequence: 16-1062-1 - 3-prime edge 
    GTAATACGAC GGACGAACTA ATTGTAAGAT GCTGATCATA TCATCAATTT 
    AAGAGCTAAA GATTACTAAT ATAACAAATC TGTTTACGTT AGATAACTAA 
    ACCATTCAAA AGGAAAATAA TATTAACTAG TTGAACATGC NTTGTTAGTG 
    ACAAAACATG TTCACAAGAT TTTGTTTGAC CAATATTGAA CTATGAAAGA 
    TGGTCATTTC CTATAACAAT TCTTTAAAGA ATACTATATA GATATAAACA 
    GTTCTATCTA AATATATAAC TAGGTTCGAT TCATTTCATC TTTGATGTCA 
    TCATTCAACG CTTTGATAAT TCTTTTATAC AACCAAATTA AACTAATCAA 
    CCATACTTAT TCTATACCGA CGAATCGTTT TGCTACACAC ATAAGCAGCC 
    TTAACTACTC ACAAGTTACA ATAATCCAAT CATGCTTAGT ACCAACAAGT 
    TTGGTTATCC TCCTCATCCT CCGGCGAATC TTGAAAAACA ATTATTATTT 
    GCCGTAAGAC TAAAAGACCA CGCAACGCAA CACAACTGTC ACGGGATCAT 
    CGGTCCTCCT TTTTCTTCAA TCCCAAAACA TTAAAAATGA AAAAACAAAA 
    GACGAGAATA TGGTCCACCT CATCGTCGCA TCTTTTGACA CAAGTCGCAA 
    AACTAGTGGC CTCTTCTCGT CTTAATTATT AAAACCAAAA CAAAACATAA 
    AAGCCATATA AAAATCACTT TAATCTCCTT AATTAATCAC ACTTTTAATT 
    AAGCCAAAAG

AT1G27200.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF23)
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 321 Blast hits to 319 proteins in 87 species: Archae - 0; Bacteria - 165; Metazoa - 2; Fungi - 4; Plants - 113; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR