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16-1063-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15930983 [Map]; Strand: w
      • AT2G38070.1 - [+] show detail - Protein of unknown function (DUF740)
        Distance: 189; Region: intergenic
      • AT2G38080.1 - [+] show detail - Laccase/Diphenol oxidase family protein
        Distance: -3477; Region: intergenic
    Flanking Genome Sequence: 16-1063-1 - 3-prime edge 
    TTCAAATTAA TTTATCTGTG AAGGTAAAAC ATAAAAGGTT TAGTTAAAAG 
    TTTATCAAAG TGAAGCGTTA TGCGAAAATT TCGGATGCTC ATATTAATTC 
    TTCTTTTGTC CATGAGTTGC TCCTGATTTT TAGCTATATT TCAATTCTCA 
    TATGTCATTG CTATTTTCCT CTTTCTCACT TATGTATAAG AACCTTTAAT 
    ATAGAAGTAG TAAGAAAATT ATAATCAACT CAAAATTATG TATACATTCA 
    TGACCAAAGA AGATGGATTA ACACTTTGAA CTACAAATTT CTAAAATTGG 
    CAAAATCAAA TCCCAACACA AGAATCAGAT TGAACCCAAA AAAAATATGT 
    AAATCTTTGA ACATTTTCTG TCAATGCAAC TTCATCACAC ATTATTCCAA 
    CTACATCTAA AAAGAANACT CGAGCTCATT ACAATGTTGT TAGTAAAAGT 
    TCATAACATT TCTACTACCA AAAGGTTGAN AAGCCGGAAC AGGCCGGCTT 
    GTCGGTGCGG TCGAATTGCC GCTTCCTCTT CGCCTTCCTT TACCCGGTGT 
    CAAGTAAAAC TTGAGCATTC CATTCTCAGC CTTACTAACT TTCTTCTTCC 
    CACTAATGTA TCCATCCACA CTATTCCGTT GCAACCCTCC TCCAGNGGTT 
    CCGGAACTTC TCCAACTCAC ACTACTATTG CTCCTAATCA TCTTCGGATC 
    AAACCCGTTC CTCGGTTCTA CATTCCACGA CCCCGAAACG TTCTATCCAC 
    CCGNTTNTTN TTTNT

AT2G38070.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF740)
Computational Description
Protein of unknown function (DUF740); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT3G09070.1); Has 108 Blast hits to 106 proteins in 27 species: Archae - 0; Bacteria - 3; Metazoa - 6; Fungi - 2; Plants - 76; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38080.1

Model type
Protein coding
Short Description
Laccase/Diphenol oxidase family protein
Curator Summary
Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.
Computational Description
IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
Link
InterPro Scan - TAIR