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16-1113-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22160413 [Map]; Strand: w
      • AT3G60000.1 - [+] show detail - Family of unknown function (DUF566)
        Distance: -471; Region: promoter
      • AT3G60000.2 - [+] show detail - Family of unknown function (DUF566)
        Distance: -471; Region: promoter
    Flanking Genome Sequence: 16-1113-1 - 5-prime edge 
    TGAAATGTTT TCTCAGTTAT TTGATCATTG TGTTCTGAAA TCTACAGAAT 
    TGTTTGTTAC TCTTCTCAGT CACATTATCA CATCACGCAA CAAAACCAAA 
    CCAATAAAAA AAAAACAAAT TAGNCTTNTT CAAAACCAAA AAAAAAAAAA 
    AAAAAAAANN NNANNCCCCC CNGGGGGGGG GNNNCCCNNG GGNCCNNNGG 
    GGGGGGNTTT NANCGGGGGG GGGGGGGGNN CCCCCCNNGG NNGNGGNNNA 
    ANNGGGGNNN NAAANNGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23130332 [Map]; Strand: c
      • AT3G62520.1 - [+] show detail - transposable element gene
        Distance: 3091; Region: intergenic
      • AT3G62528.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1150; Region: intergenic
    Flanking Genome Sequence: 16-1113-1 - 3-prime edge 
    ATTAAAACGG TNGAGGTATT TTACCGACCG TTACCGACCG TTTTCGTCGG 
    CGTATATGTT ATATGCAATG TATATTTTTT TTTTATNAAG GATGTNTANA 
    TGTATAAATA GGGNGTGAAT GTGTCTCATN CNTAAATCCA TAATAAATGT 
    ATNATAGGGN GTNAATGTGT NCATACATGG CNCCGAACGT GTCTCATATN 
    CATAATAAAT TGTTGATTGG GTGTNAATGT GTCTCATNCN TGGCNCNAAT 
    GTCATACTCA TATNCATAAT AAATGTNCGT NTAGGGNGTN AATGTGTGTN 
    CATAAATTAC GTGTGACCNA CCGTAGGGTA NTACCAAAAN CNTAAAACAC 
    AAANT

AT3G60000.1

Model type
Protein coding
Short Description
Family of unknown function (DUF566)
Computational Description
Family of unknown function (DUF566) ; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT2G44190.1); Has 252 Blast hits to 250 proteins in 45 species: Archae - 0; Bacteria - 2; Metazoa - 26; Fungi - 19; Plants - 197; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60000.2

Model type
Protein coding
Short Description
Family of unknown function (DUF566)
Computational Description
Family of unknown function (DUF566) ; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT2G44190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62520.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-86 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)
Link
InterPro Scan - TAIR

AT3G62528.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR