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Mutant Lines
16-1117-1

16-1117-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 6314165 [Map]; Strand: c
  - AT3G18380.1 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
    Distance: -846; Region: promoter
  - AT3G18380.2 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
    Distance: -847; Region: promoter
  - AT3G18380.3 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
    Distance: -846; Region: promoter
  - AT3G18390.1 - [+] show detail - CRS1 / YhbY (CRM) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 16-1117-1 - 5-prime edge
```
GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATATCAC TCTTCCTCTT NCTCACTCTC TTCTCCCTCA GCAAGCATCA 
TATCAGGTCT CACCCACTCT CTCTTCAACA AATCCCCCAA TCTCTCTTCT 
CCAGTCACCG GCTTCACATC TCCGCCGTTA ATTCCACCTC CCTCGTCATC 
TTCCACATCG TCCTCATCAT CCGAACCTAA TCCTAAATTC CGTAGCCGAA 
GAACAATCCT CTCAATCGCG TTTTGTCCTT TATCCTTCTC CAAATACCGA 
AGTTTCGCTT CCGCTTCCTC CTCCGCAGAC CGAATT
```
3 prime edge [+] show sequence
1. Chromosome: 3; Position: 6314178 [Map]; Strand: c
  - AT3G18380.1 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
    Distance: -859; Region: promoter
  - AT3G18380.2 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
    Distance: -860; Region: promoter
  - AT3G18380.3 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
    Distance: -859; Region: promoter
  - AT3G18390.1 - [+] show detail - CRS1 / YhbY (CRM) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 16-1117-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAGATG 
AGGTATTATT GCCATGGGAG AAAAATGAGG AAGAGCAGGC GGCGGAGAGA 
GTAGTAGCAG AAGGAGGAGT GGCGGTGATG CAGAAGAGGA GAGCTAGAGC 
TCCATCACTG GCGGAGCTCA CCGTTGAGGA TTCTGAGTTA CNGGCNGGTT 
AAGGAGGGAT GGAATGTATC TGAGGGTTAG GATCAATATA CCAAAAGCTG 
GGCTAACGCA GGCAGTGATG GAGAAGATTT ATGATACTTG GAGGAAAGAA 
GAGCTTGTGA GGCTAAAGTT CCACGAAGTG CTTGCTCGTG ACATGAAGAC 
GGCCCATGAG ATTGTTGAGG TTCGTTAGTT CTCTTGAATA CTTCATTGAT 
TAGAACAGTA GGTTAGCGAA ATTTGAGGTG CGAGATTATT CCAAGAGAGA 
GCGGTTTTCA TTATCTATTG GGGATAAGCT
```

AT3G18380.1

Model type: Protein coding
Short Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Computational Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 91 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G18380.2

Model type: Protein coding
Short Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Computational Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G18380.3

Model type: Protein coding
Short Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Computational Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2).
Link: InterPro Scan - TAIR

AT3G18390.1

Model type: Protein coding
Short Description: CRS1 / YhbY (CRM) domain-containing protein
Computational Description: embryo defective 1865 (EMB1865); FUNCTIONS IN: RNA binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3B (TAIR:AT4G14510.1); Has 1281 Blast hits to 1142 proteins in 135 species: Archae - 11; Bacteria - 10; Metazoa - 285; Fungi - 118; Plants - 447; Viruses - 43; Other Eukaryotes - 367 (source: NCBI BLink).
Link: InterPro Scan - TAIR