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16-1120-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2035814 [Map]; Strand: w
      • AT1G06650.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -25; Region: promoter
      • AT1G06650.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -70; Region: promoter
    Flanking Genome Sequence: 16-1120-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACNGACCGTT ACCGACCGTT TTCATCTTGC 
    TACAGCAAAA CCATTGTCCT ATTGATAAGA GATAAGGTTT ATTGACAAAA 
    ACAACCACGT ATGACGGTAA CCGGACCAGG CAAGTCTAAG TCAACAAGAA 
    GTTAAGTTAT TACAGAAAGA TAAAGAAAAA CAAAAAAAGG AAAAAAATAG 
    TCTCAGGATC TTTTATAGAC AAAATGATAC AGACCACACC TTATGTGGAC 
    TAAACCGAAA TAACGATTCT TAATTAATCA TAAATTCCAC ATGCATGTGG 
    TTCACACATC TCCAACATGT TACATATACA GTATGTGTGT GATAAAGTAG 
    TAGCTAGCTC GCCATGTTTC ATATTTTGAA ATGGAGCAAC GCAGAGGTTC 
    CGTCAAGTCC TTTGGCACTG AAGTAAGCAG TGTAGTCTCG AATAGTGGTC 
    TCTCTGTACT TTGGAGGGTT TTCTTTAGAC ACAAGCTCTC TAATGGGTCC 
    GTACATTGTA GGGTTTGGTC TCATGGCGGT GGTGAAGAAA CCTGCTACAG 
    AGACTCGAGC TCTTGTTGCT CTGTTCGCCA ATACTCTGTG CTCCAAACTG 
    ACNAACTTGT CGTTTGTTAT AAGCTGCATT AATACAAACA AACAAAAAAA 
    TGTTTGAACC AAGAGGAAGA TTTATACTTC TGCAAAACAG AGCAAAAAAA 
    TGTATTGGTT GTGCAAACTT GCCTGTANAA NATCTCCGAT GTTGATGATT 
    ANAGCTCCTG GAACATGAGG AACGTTGAAC CAGTNCCCTT CACGAAAAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2047513 [Map]; Strand: w
      • AT1G06670.1 - [+] show detail - nuclear DEIH-boxhelicase
        Distance: 0; Region: exon14 (3UTR)
      • AT1G06680.1 - [+] show detail - photosystem II subunit P-1
        Distance: -312; Region: promoter
      • AT1G06680.2 - [+] show detail - photosystem II subunit P-1
        Distance: -373; Region: promoter
    Flanking Genome Sequence: 16-1120-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTCC 
    GCCATCCTAC TNTNNTCCNT NGGNGANNNC GNNCNCACTA AGTGCTGCCN 
    CTGNNNNATN GCGNTGNTCN TTNNNCGATA NACGCATGNA ACGNGAAGCG 
    AAGAAAAGCC ATTATTGATC CAGTACTGTA GTGTCTTAGT GTGAGCAGAA 
    AAAAGATTTG ATCATGGAAT GGCTTTAGAG TAAAATACTA AAATAGATGG 
    AATCGAAGGC TTATGAATCT GACGTGGAAC AAGAAGAAAG CGTATCTGCC 
    ACGTGGCACA ATACAACACC TCAACAGCCT TATCTGGACA TCAACAGAGA 
    GATCCTCCAA TATCCGAAAC CAACCAATCA GCTTCACTCT TGGTTTCACC 
    TCCATACATT AACACACCAA CAATCCTCAA AAAACACTTT CATAACTTAA 
    TCACACACAA GGAGAGAAGA GAGAAAGAGA GAAAGAGAGA CAGAGATAAT 
    GGCGTACAGT GCGTGTTTCC TACACCAGAG CGCATTGGCT TCATCAGCCG 
    CACGATCATC ATCTTCCTCC TCATCCCAGC GTCACGTGTC GCTCTCCAAA 
    CCTGTTCAGA TCATCTGTAA AGCTCAACAG TCTCATGAAG ACGATAACTC 
    CGCCGTCTCC CGCCGTCTTG CTCTCACTCT CCTCGTCGGC GCCGCTGCTG 
    TTGGTTCCAA AGTATCTCCT GCTGATGCCG CCTACGGTGA AGCTGGTGCG 
    TTTATAAAAT AAATAACCTT GGATCATTTC ATTTTCTTGA AGAAAAATCT 
    TGAANAACAT ATTGG

AT1G06650.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary
encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06640.1); Has 7290 Blast hits to 7263 proteins in 928 species: Archae - 0; Bacteria - 977; Metazoa - 84; Fungi - 531; Plants - 4672; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06650.2

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary
encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06640.1); Has 8180 Blast hits to 8149 proteins in 985 species: Archae - 0; Bacteria - 1067; Metazoa - 118; Fungi - 802; Plants - 4889; Viruses - 0; Other Eukaryotes - 1304 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06670.1

Model type
Protein coding
Short Description
nuclear DEIH-boxhelicase
Curator Summary
nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins
Computational Description
nuclear DEIH-boxhelicase (NIH); CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Ankyrin repeat-containing domain (InterPro:IPR020683), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase in vascular tissue and tapetum (TAIR:AT2G30800.1); Has 26020 Blast hits to 16191 proteins in 1841 species: Archae - 22; Bacteria - 7563; Metazoa - 5966; Fungi - 2932; Plants - 1417; Viruses - 339; Other Eukaryotes - 7781 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06680.1

Model type
Protein coding
Short Description
photosystem II subunit P-1
Curator Summary
Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.
Computational Description
photosystem II subunit P-1 (PSBP-1); FUNCTIONS IN: poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 12 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1); Has 287 Blast hits to 286 proteins in 81 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06680.2

Model type
Protein coding
Short Description
photosystem II subunit P-1
Curator Summary
Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.
Computational Description
photosystem II subunit P-1 (PSBP-1); FUNCTIONS IN: poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR