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16-1126-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 97395 [Map]; Strand: w
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: exon11 (3UTR)
      • AT4G00231.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -104; Region: promoter
    Flanking Genome Sequence: 16-1126-1 - 5-prime edge 
    AATGTAATCC TCTCACTTGT TCGTAAACTA ACTCATTCCA CTGCTTAATT 
    TGAAAAAACC ACTGTATTAA ACTTATAGGC CAATAAGCCC ATATTAGAAT 
    ATTTGGGCCT TTGGGCCCAT TACACGAAAC ACTACTTACA GAATAACCTC 
    TACCTCTCTC TCTATCGGAA AAGCCCTAAA GCAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 97279 [Map]; Strand: w
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: exon11 (CDS)
      • AT4G00231.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -220; Region: promoter
    Flanking Genome Sequence: 16-1126-1 - 3-prime edge 
    ATTACATTGA AGTAAAATGT TGTTTTGGAG ATGTGATTAA TTTCAATCCG 
    AAGTAGGACT ATAAATAACA ATGGGGCTAC GAACAGAGTG ACGTGGGCTC 
    TTCCACACGA GCAAGCCGGA CACAATCTTC CCAGGAGTCA TTTGTTTGGC 
    CTTCACCACC ACTTTGAAGC T

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00231.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
maternal effect embryo arrest 50 (MEE50); FUNCTIONS IN: binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Ataxin-10 domain (InterPro:IPR019156), Armadillo-type fold (InterPro:IPR016024); Has 293 Blast hits to 290 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR