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Mutant Lines
16-1222-1

16-1222-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 30042505 [Map]; Strand: c
  - AT1G79850.1 - [+] show detail - ribosomal protein S17
    Distance: -553; Region: promoter
  - AT1G79860.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 12
    Distance: 0; Region: exon5 (CDS)
Flanking Genome Sequence: 16-1222-1 - 5-prime edge
```
CGNGATAAAA CTAACAAAAT GCCGGTTATA CGATAACGGT CGGTACGGGA 
TTTTCCCATC CTACTTTCAT CCGTGGGCCA GGCGNTGCTG GAGAGCTACT 
CGAGAATACT GGAAAGCT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 30042495 [Map]; Strand: c
- AT1G79850.1 - [+] show detail - ribosomal protein S17
  Distance: -543; Region: promoter
- AT1G79860.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 12
  Distance: 0; Region: exon5 (CDS)

CTTTAAAANG GACCGAGGTA TTTTACTTNA CCGTTACCGA CCGTTTTCAT 
CCCTGGGCCC ACGTCCTCGT TGAACTGGAT TTTGCTGATG TCGAGTGAAG 
ATTGAGAAAT GCCGGGGTAT CTTTGCTTGA GAATGAGCAA AATGGTCTCA 
GCTCGCTCTT CGAAGACCTC TCGCTTCTCC AGACTTACTC CGGAGGCCCA 
GGGTGCCGAT GATTTGTTGT CTTTATAAAC CATTTTGCGT TTCCATATAA 
TGATTGATGC CTCGATTCTG TTTTTGAGGT CCACGATCTT GTGCTCCGAC 
GACATGTCCA TGCTGCTCAG GAACTGGTCC GGGTCAAAGA AGTCCACCGT 
TATATTCTTG TACATCTGAT CCCCGAGACT CGCCCTCCCG TTCTGTTTAT 
TTATTTATTA CAAACTAAAC AAGTGAGTAT TATTCTTCAT CAACTCTTCT 
AATCAATAAC ATCAATTGTT GGTGTCTTTT TTTCTTTTTA CCTTTGGGAG 
AGAGTCGATG TAGCTCTCAG GTATCTCCAT CTCGAACAAA ACCTGTGCGT 
TTATGGCCAT GGCTGCCTTT AGAACCTGGT TTACACAATC TTTCTGGTAC 
TGCAAAAACC TTCTTGAAGC T

AT1G79850.1

Model type: Protein coding
Short Description: ribosomal protein S17
Curator Summary: nuclear-encoded 30S chloroplast ribosomal protein S17
Computational Description: ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G79860.1

Model type: Protein coding
Short Description: RHO guanyl-nucleotide exchange factor 12
Curator Summary: Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth.
Computational Description: RHO guanyl-nucleotide exchange factor 12 (ROPGEF12); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1); Has 305 Blast hits to 303 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR