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16-1365-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20085452 [Map]; Strand: c
      • AT1G53810.1 - [+] show detail - transposable element gene
        Distance: -132; Region: promoter
    Flanking Genome Sequence: 16-1365-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGCATTT 
    TCCCATCCTA CTTTCATCCC TCGTCAGTAT AATTCAGTTG GGGTGATTTA 
    TAATCCCATC ACAGGAGAGT CTTCAAACTT GCCGAAACTA AGTTTAAAGG 
    GGATTAATAA GTCAGAGTGG TTATGTGATA AAGCAAGATA TTCTTTTGGG 
    TATGATCCAA TCGAGAAACA GCTCAAAGTG TTGTGTATCA CCTGGTTGCG 
    TACTGGCTCA GAGCACTTGT CCAATGAGTA TCAAGTTCTC ACATTAGGGA 
    CTGAAAATAA AAAAACTCTT TTGGAGAAAG ATTCAAGGTT GTGCAATTCA 
    TTTTTTTTGG GACAATACTG CGATATGCAT CGATGGTGTT TTGTATTATC 
    CAGCAATGAT CTATAAGGGG GAAGGTACCA TCGTTTGCTT TGATGTTAGG 
    TCTGANAAAT TTAGTTTTAC CAACATTGAT CAAGATGACA TAGCAGTAAA 
    GATAGATTCT TGCACTTTAA CGTTGATCGA CTACAAGGGT AAATTAGGTG 
    CTTGTAGTTT TAATATTAAC ACTAATCTTT TGGAGTTGTG GGTTTTGGAG 
    GATGCCAAGA AAAATAAATG GGGTCAAAGT ATATCTACGC AATATCTTAT 
    CCGTGGCTCG TGAAACCCAG TCATGTACGT CCTGCCGGAA TGACTGGTAG 
    TTGCGAACTT GTGTTATACC CAATCTTTAT AGGAGGTCGN CATCCTTTCT 
    TCATTTTGNN CTACAATCTC NAGAGCAAAA TCNTCACCAT TGNAAAACTT 
    GAAATCAACT TTTAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20090555 [Map]; Strand: c
      • AT1G53815.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G53820.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -936; Region: promoter
    Flanking Genome Sequence: 16-1365-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AGTACCCGTC CGCAGACAGG ACCACATATC TCATAGAACT TGGTGTTACC 
    AGTGTTCTGA TGAAGGGTGG CTACAAGAGA CGAGTTCTCA TCCGGATTGT 
    GAGGCTGAGG TGAAGAGTAA AAGAACAAGA TTCCTGCATA TTCGATGGTG 
    AAAAGGATC

AT1G53810.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.0e-248 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR

AT1G53815.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G53550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53820.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72310.1); Has 9301 Blast hits to 9282 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 2391; Fungi - 736; Plants - 4843; Viruses - 80; Other Eukaryotes - 1251 (source: NCBI BLink).
Link
InterPro Scan - TAIR