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16-1379-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11584238 [Map]; Strand: c
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 3691; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 2278; Region: intergenic
    Flanking Genome Sequence: 16-1379-1 - 5-prime edge 
    CAAACATAAA CACTCAAAAC TCAAACACTA CCAAAAACAA ATCATATCTC 
    ACGCAAAAAA ACCTCCAAAC ACACTCAAAG GTAACAAAAA AGCAGAACAT 
    AACAAAAGAA ACAAAATACA GCACAACACA AAACTAGACA CAAGAAAGAA 
    AAAAAAAATC ANTANCGTCN CGGTTAATAT CTTTTTTTNT TATNGGTAAA 
    AACTTTGANA TCCNGTNGCN AAGNCAATTT CAGGTAAGTN TCTTTATCTT 
    CCTATTTTTN TTCCGTTTTT TTATCTTTTA CAACTTACAA GTTACAACTN 
    TNAATNTTTT NGTNAACAAT TTNGNNCTTN GTNNGCTNTT CCAAAANANA 
    ANTTCANNCC NNTNCAANCN AAAANGGGGT NTTNCTTNCA AAAGTAAANN 
    GGNANCCAAG GTNTTNNCTN GANGTAATCT TTTNGTTANC ANCTAAATNT 
    GTTTCGTCNN GNGATTTTAA GNNAAGGGGT TTNGGGGANG ATTCAAAATC 
    CAANAAAAAC NCTAANGTTT TAGGGTAAAG NTACN

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR