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16-1385-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 19811 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 16-1385-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTT 
    GCATTTGCTG ATATAATGTA GCCATCCTGC TATACGCTTC CATCGTCGTT 
    GGCTGCAATT CCAAATATAT AAAAATATAA ATGGTACTGA AGCATTGTTT 
    AGACCCAAGT TGTATATCTA TATATAGAAA AAGGGTCAAC CTGAGTAGAG 
    CATGCAAGAA AGGCAGACAT AGGATCGGGG ATGAGAGGAG ACTGAAATCG 
    AGAGTCATTG GAAGAAGCAT CCCACGATGG ACAATTCATG GGCAAAAATG 
    GGTTTGGCAT CATGTTGGCA TGGATATTAG GAGCGCTTGC AGCAGCTCGG 
    TTCATAGAAT TAAGGTCGAG GAGACCGAGA CCGGGCATCC CCATGCCCAT 
    CCCTAAACCC ATGGGATTGG ACATGAGAGA CATTTGTAGT TGTTGTTGTT 
    GCTGCATGGC CATAGGAAGC ATCATAGAAG GCATATTCAT TCTGCTCATC 
    ATGCTCACTT GTGCTTGAAG TTGCTTCAAA TACTCTATCA CTTCATCCAA 
    CATAGATGCT TTATCCGTCT ATAGTTCCAA AATTAACGAT TTATATATCA 
    AGCCTCTTTG GTATCTACTA TAATTAACCA AACCAATGTT ACGGAGCATG 
    TGTGTAATGT AGATTGTGTT GATTTTTGAG TCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 19818 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 16-1385-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC AACAACTTCC TCCTCCTTCG AATCCAAAAT 
    GATTATTACT CAAACACCTC TATATAGTTT ACGTCTATAT ATGTGTTAGT 
    CACATACATA CATATATATA TTCCATCATA ATTATTTATT TATATGTATA 
    GGCTTCTCAT GAATTATGAT ATTATACGTA TTACGTACTT TAAAAATATG 
    TGGTCGTAAT TGGATAGAGA AAAATAAATA ATGGTTATGT TTGAGTGAAT 
    TAGTAACATC ACTCCACGTC TCCACCACAT CCACAAATGA ACTCCAAATT 
    TTCTAGATCA ATATACGAAC AGTAGATAAT CCTTCGTTTT CACGAATTTA 
    ATTATGTGAC TGAGGATAAG TGAAAAGTGG AAATGGAGTA GACACAATAG 
    CATATGCTTT GTCTGCAAAA TTCCACAATA ATTTGTTGAT AATGTTATTG 
    AATTTATTTA TAATGCTACA AGAAACAAAA AGAAAGCGAA TGTTTATTTT 
    TTAAAGGTGC TGTAAAATGA TTGGGTGTTA ACAGGTCAAC TTGGCCCCGA 
    CCATTACCAC ACGTTTGTGA GTGAACAAGT CATATTATTA TTAATAACGA 
    AAAGTGACTC GAAAATTCAT GAGAAAAATG CCAAACTCAA CTACTCAAGT 
    AAGTATAAGT ATACTGTTTA CACTATATAG TAATCAATCG TCACCACAAA 
    TTAAGCCCTA TATTTGNCGG TTTACTAATA A

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR