1. Home
  2. Mutant Lines
  3. 16-1399-1

16-1399-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11571361 [Map]; Strand: c
      • AT1G32160.1 - [+] show detail - Protein of unknown function (DUF760)
        Distance: 974; Region: intergenic
      • AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
        Distance: -3959; Region: intergenic
    Flanking Genome Sequence: 16-1399-1 - 5-prime edge 
    TTAAAAACTA ACAAAATCGG TTATTCTGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTGAA ATAGGGAAAC TAAAAACAAG GTCCAAATTC 
    AGCAATCATC AACCAATTAG AGAAGAATGA GAAAGTCTTT GGGGTATTGA 
    ATAAGGTAGG AAAACTCAAC TGCATCATCT TCTAGAGAGG GTTGACCTTA 
    TACAAGAGCA TTTGCATGTG GATTTCATCA TTACTAGTGA GAGAGTAAAC 
    TAATCCATAT TTAAACTCCA CTATTACACT TATTGTTATT TTAAAACTGA 
    AAACTAATAA TTGAATAATC TATGTTTCAG GTTTTAGCTC TTTGTATGTA 
    GTCTTAAAGA AAACAATGAG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11571392 [Map]; Strand: c
      • AT1G32160.1 - [+] show detail - Protein of unknown function (DUF760)
        Distance: 1005; Region: intergenic
      • AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
        Distance: -3928; Region: intergenic
    Flanking Genome Sequence: 16-1399-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    CTATTTGACC CGTTTGTGTA TACATATACT GTACATTGTT TTTGTTTCCT 
    ATTAGCCAGT GAATGTTTTG GAATACAATT ATGGTGTTCT CTGTAAATTT 
    AGCATCTCTA TAATTTAAAA TGATAAAACT ATTTTTAGTA TGTTCTTAAA 
    AAAAAACATC TCAGCTTACC AAAAGATTTT CTTTTATATT CCGTTCCTAT 
    CTTTCCACTT CATAAATTCT TCGTTGTTGC NATTCTTGTC ATCACTTTGA 
    TATCTTTCTT TTTTCCATTG TTCGGTCGAC AGAATAACTT TTGGTATAAG 
    TTTATTTATA TATATATTGN NAACTTAGTT NGGAAAACGG ACGTCAAACA 
    AAAGAAAACT AGTTTANAAA GAGTTTCGAA CCATTTTCAN AATT

AT1G32160.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF760)
Computational Description
Protein of unknown function (DUF760); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT1G48450.1); Has 138 Blast hits to 138 proteins in 25 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G32170.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 30
Curator Summary
xyloglucan endotransglycosylase-related protein (XTR4)
Computational Description
xyloglucan endotransglucosylase/hydrolase 30 (XTH30); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 29 (TAIR:AT4G18990.1); Has 2058 Blast hits to 2046 proteins in 299 species: Archae - 2; Bacteria - 244; Metazoa - 0; Fungi - 398; Plants - 1344; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR