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16-1415-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)
vascular leaf (PO:0009025)
  • wrinkled (PATO:0001810)
    (Leaves::rough surface)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2368198 [Map]; Strand: c
      • AT5G07480.1 - [+] show detail - KAR-UP oxidoreductase 1
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 16-1415-1 - 5-prime edge 
    CTTNTAAAAA CTAACAAAAT CGGTTATTCT GATAACGGNC GGTACGGGNT 
    TANCACATCN TGCTGTCNTA CCATGCNNGC NCTANAGGGA GTGNNNTNAC 
    NNCNGCNNTA CNGGGNACGG NTNANGANNN CNATNNCCCG NTNNAGANGC 
    ACNNNNNNAA NATAGCACAN ATATCTGCCG CTATATTTTA TAGATGCAAT 
    GTATAAGTAT GATCTAATCA GTGACATGTA ATACCTGTAT CNNGGTGGAT 
    TCTCTGGCCA AAGATGAATC CAACGATGAA GAGGATGTGC ATAGTGCTTT 
    AGAAAAATCC TCCAGAATTG GATCTTGTCC AAACCGTCCT TGAGACTCGT 
    ACTGTACCGA ACCGGTGCGT AGACATCGTT TGACATAAAC TTTTTCTTCT 
    CCTTCGCCGG CAGCTCGAAG AAGCTATTCG CAACCTCCAA GGCGTCATCT 
    AGTATGTTCT GGTTGATTCC ATGGTTCACT ATCTAATATA TTCATCGGAC 
    AAAAAGAATG GAAAAAATGA ATCANTTTGA GTGGAAGGAT ATACCGGAAA 
    ATGTTGAAAT ATTTTGGAGC CAATTAACCA GAAACTACNT TTAGACCCCC 
    GGCATGTGAC AATANACTTT NCGTTGCTAN CACAGNTGAT ATTTTGATTT 
    CNACNAATTA CCAAGAGCTN ATNTTNCGNG TTTTTAANTA NTGACACNAA 
    CTATATGNNT GNTAATACTA TGTTGAANCC GNGGGNTGTN NAAANGTAGG 
    CNAACTNNTT NNGGNNNTTT NTNGNTGGNT AAANAGAANN TNNANNGGNN 
    AAAANAAAAA AAANAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2368237 [Map]; Strand: c
      • AT5G07480.1 - [+] show detail - KAR-UP oxidoreductase 1
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 16-1415-1 - 3-prime edge 
    CTTGCAACCC TTCACTTATC ATTTTTCTTT TTTTCTTTTT TTGTCCTTAT 
    GTTTAAAACA ATAAAAAGAT ATATTAAAAT ACTGAATAAG CT

AT5G07480.1

Model type
Protein coding
Short Description
KAR-UP oxidoreductase 1
Computational Description
KAR-UP oxidoreductase 1 (KUOX1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: response to karrikin, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G60290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR