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16-1446-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7292289 [Map]; Strand: w
      • AT4G12250.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 5
        Distance: -1387; Region: intergenic
      • AT4G12260.1 - [+] show detail - transposable element gene
        Distance: 768; Region: intergenic
    Flanking Genome Sequence: 16-1446-1 - 5-prime edge 
    GGAAANNGCA ACAGNGCCCG NCNTACAGCC TNACCGTNCG CGNGCGGATA 
    ACCANGNCGG GCAGNNCAGA ACGCGTGCAA TANAGGGAGN AANATGANCC 
    CGGNTAANNA GAGCANNNCC AGATAGAGGN TTAGGAGGCG AGNACATANA 
    AGGGTTTGGG TAGGTATTGN TNNTTCCATT GAAAATTCGA AATGTAACCG 
    AATATTATTG GATACTAGTT CATAACTACT ATAATATACC CGAACATACT 
    TGATACTAAC CACATNGACC ATANAACCTG TAAATTTGTN ATAAATAAAA 
    ACTTGANGTN AAATCAATAA AGCNTGACAT AGTAAAAGTT TCACACGTTC 
    NNCCNNNNNG CANGATTCAA ANCNTNCAAN TNAAACCNTN NNNTNNANGA 
    ANGANGTTCA AATCCAAAGN NNGACNTGNN NCCNTCGTTC NGANTNGNGT 
    CCNNNGNGTT CTGGGTNGGA ANGAAGNTCA NAATNCNGGC NNCNTNCANN 
    GTGANAGATT GTNCANGANT TGNGCTGTTC NTNTGNNGCN NTNAGCTNGT 
    TGGTNGTNNN NNCCNNTNNG GNNGGNTTNG NNNNTGNNNC GNGNGTGNGN 
    NNNNNNNGNN TGNNNGNGGG TGNNTNNGNN TGNGNGGNTG NTNTTNNNGC 
    NTNNGCAGGN NNANAGGGNN NGGANNNNGN NGGNGNGNNN NNTNTNNTGN 
    NNNNNGNGGG CNNGNNTNNN AGAAAAAANA AAAAAAAAAA N

AT4G12250.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 5
Curator Summary
UDP-D-glucuronate 4-epimerase
Computational Description
UDP-D-glucuronate 4-epimerase 5 (GAE5); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 3 (TAIR:AT4G00110.1); Has 40243 Blast hits to 40231 proteins in 2957 species: Archae - 760; Bacteria - 24181; Metazoa - 696; Fungi - 354; Plants - 1138; Viruses - 37; Other Eukaryotes - 13077 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G12260.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hAT-like transposase family (hobo/Ac/Tam3), has a 6.7e-21 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)
Link
InterPro Scan - TAIR