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16-1483-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 268192 [Map]; Strand: w
      • AT4G00630.2 - [+] show detail - K+ efflux antiporter 2
        Distance: -161; Region: promoter
      • AT4G00630.1 - [+] show detail - K+ efflux antiporter 2
        Distance: -142; Region: promoter
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: -834; Region: promoter
    Flanking Genome Sequence: 16-1483-1 - 5-prime edge 
    NGGNANANAG AGGGNNANGC AAACNGGNNA GGANNACNNG GCGNNGATCN 
    CAAANCCGGG NCGGNNACNA CNNGCGANCA ANAAATAACG ATNNGGGGCC 
    TANNNACCNG GCTGNNCNAG ANTAAGGGTG CAGCGTGACC AAGTGATTNT 
    CCAAATGTGT ATNAATANTT GNGAACNNTT ATTAATAAAA AAGCGAGCGA 
    CGTTGTTCTT TGATGAGGGA ACGACCGTAC GCTTGGCGAC CTTNTCTGAT 
    TGCGTAGAGA CGNNTTCCTT ATTGGGCTTA CCTAGTACCG NCAGCCCACA 
    ANGTNNTCAT NTNTTTCCCA CCTAAAACTA AAAGTGCTCA CAAGTCACAA 
    CTTAAAACCA ACTACANAAG GATNTTATCA TGGGATTATC GNGNNTGAAG 
    ACCAANAAGA GNAACCATNA CCCCCANTTA NNTGCGNGGT AGAGNAANGA 
    CAGNAACATN NAGGGTTCAT ATNNCCGACC NGGAACCGTT NTNTGNGATT 
    ANACATGNCA NAACCCCTGC NTTNNGTGAN NATTNCACNA CAATATATNA 
    CATGGNANAA ANANTGCAAN TTAANTGTGT TTTAATTAGT AAANTANNAA 
    GAGANNAAGT AGGCGANATT AAANCAAGAA GGCTNACANN AANCNNNAAN 
    CCNCGAGNAA GAGAAATNAG CGNAAAAAGG GTGANGAAGG GGGAANGANG 
    GGGGGANGTG ATAAGNGNGG NGAGNNAAGG CAAGTGNNAA AAGNANNGAA 
    AGCAAAAAAN AAAAANAAGA GN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 268066 [Map]; Strand: w
      • AT4G00630.2 - [+] show detail - K+ efflux antiporter 2
        Distance: -35; Region: promoter
      • AT4G00630.1 - [+] show detail - K+ efflux antiporter 2
        Distance: -16; Region: promoter
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: -960; Region: promoter
    Flanking Genome Sequence: 16-1483-1 - 3-prime edge 
    TATGTGCACG AATTGAATCT CTCTAAGCAC GAGAGGGCAT TTTCGTAACT 
    TTCTTATAAA AAATCCTACC ACGAGTGATT GGGCAAAAAA AACTGAAAGA 
    GGAAAGAGAG AGTTGGACGG AAAATCTGAA GACCGCCGAG AAAAATACTT 
    GTTGAAACGG AACTCTCTTA CGTTTTTTCT CAGGAGATAC GTTTCATCTT 
    CCTCTCAGTA ACTACTCGAT TCTCACTCTC TCTCGCCGCC ATTGATTCTT 
    CATCAGCTGA AGCCTTGAAG CTCTCTTCTC TTATGATCGG TCAGTCTCTT 
    GTTCTCTCCG TCTTTCTGCA GCTGTAATAT GGATTTTGCG TCTAGCGTTC 
    AGCGCCGGAG TATGTTTCAC GGTGGTGCGG ATTTTGCGAG TTACTGCTTG 
    CCGAATCGAA TGATAAGTGC GAAACTGTGT CCCAAAGGAC TCGGCGGCAC 
    TAGATTTTGG GATC

AT4G00630.1

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153), K+/H+ exchanger (InterPro:IPR004771), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1); Has 34304 Blast hits to 27699 proteins in 2887 species: Archae - 928; Bacteria - 15112; Metazoa - 9897; Fungi - 1524; Plants - 1371; Viruses - 95; Other Eukaryotes - 5377 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00630.2

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771), Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1).
Link
InterPro Scan - TAIR

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR