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16-1486-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 102218 [Map]; Strand: w
      • AT5G01240.2 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 383; Region: intergenic
      • AT5G01250.1 - [+] show detail - alpha 1,4-glycosyltransferase family protein
        Distance: 75; Region: intergenic
    Flanking Genome Sequence: 16-1486-1 - 5-prime edge
    NTCATANCNA CAAAGNNNGT TCACTGATNN TNAAAGCTAC NAGNCGGGNC 
    ACGTCTAACC ACNCTGNGCC TGGATACGGA TGATNCAATT TTAATTGGTN
    AACTCGCGTC CNNNNTTNTT GGGGCTTANT GTNTNATNNG AAGTANAANG
    AAGGTTTTGC NAAAAAANNA CAACAAAGTT NTNTACAGCG NGTGTGATTA
    ATGGAACANA TTCANACANN GGACNANGAG GACNCANAAC TAATTCCNCN
    GANNATGCAA NGCTCTGAAA CCANNTTCCA CATGGCACTT CCTTGTTCAA
    TTTCGTATTT CCTGCTAAAC TTATTCCACA GATGCAAACC ATAACCATTC
    CTCTGCATAT AAAGAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15091652 [Map]; Strand: w
      • AT2G35940.3 - [+] show detail - BEL1-like homeodomain 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G35940.1 - [+] show detail - BEL1-like homeodomain 1
        Distance: 0; Region: exon3 (CDS)
      • AT2G35940.2 - [+] show detail - BEL1-like homeodomain 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G35945.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-1486-1 - 3-prime edge
    CATAGATGGC TGCTTACTTT CACGGAAACC CACCGGAGAT CTCTGCCGGA 
    TC

AT2G35940.1

Model type
Protein coding
Short Description
BEL1-like homeodomain 1
Curator Summary
Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.
Computational Description
BEL1-like homeodomain 1 (BLH1); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 71711 Blast hits to 13510 proteins in 414 species: Archae - 28; Bacteria - 75; Metazoa - 3080; Fungi - 2154; Plants - 2539; Viruses - 2; Other Eukaryotes - 63833 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35940.2

Model type
Protein coding
Short Description
BEL1-like homeodomain 1
Curator Summary
Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.
Computational Description
BEL1-like homeodomain 1 (BLH1); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 71711 Blast hits to 13510 proteins in 414 species: Archae - 28; Bacteria - 75; Metazoa - 3080; Fungi - 2154; Plants - 2539; Viruses - 2; Other Eukaryotes - 63833 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35940.3

Model type
Protein coding
Short Description
BEL1-like homeodomain 1
Curator Summary
Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.
Computational Description
BEL1-like homeodomain 1 (BLH1); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35945.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT2G35940
Link
InterPro Scan - TAIR

AT5G01240.2

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); FUNCTIONS IN: transporter activity; INVOLVED IN: amino acid transport, root cap development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01250.1

Model type
Protein coding
Short Description
alpha 1,4-glycosyltransferase family protein
Computational Description
alpha 1,4-glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi stack; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase, DXD sugar-binding region (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein (TAIR:AT3G09020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR