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16-1529-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4209295 [Map]; Strand: c
      • AT5G13205.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 3; Position: 22063302 [Map]; Strand: w
      • AT3G59720.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    3. Chromosome: 1; Position: 7721358 [Map]; Strand: w
      • AT1G21945.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    4. Chromosome: 1; Position: 18016928 [Map]; Strand: w
      • AT1G48710.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    5. Chromosome: 1; Position: 21526184 [Map]; Strand: c
      • AT1G58140.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-1529-1 - 5-prime edge 
    GATAAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCCGC TGCTTCATTT TCCCAAGAGG GATAAGAAGC 
    ACGCTGTTTC ATTTTCCCAT AAAGAAAACG AAAGAACCGA GTAGTTTAGA 
    CTTAAGTTAT TTATGGATTA AATATAATTC TGTAGTATAT TTTAAAAAGA 
    AAATTTATAT GCNGGTCGGA GTTGTTAGTC GTTACATGGA GCATCCAACA 
    ACAACTCATT TCAAAGCGGC AAAAAGGATT CTTCGCTATA TCAAAGGTAC 
    CGTAAACTTT GGCTTACATT ATTCAACTAC TAGTGATTAC AAGCT

AT1G21945.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-243 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT1G48710.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.1e-252 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT1G58140.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.6e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT3G59720.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.1e-214 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT5G13205.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.1e-252 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR