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16-1556-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3510754 [Map]; Strand: c
      • AT3G11200.2 - [+] show detail - alfin-like 2
        Distance: -202; Region: promoter
      • AT3G11200.1 - [+] show detail - alfin-like 2
        Distance: -127; Region: promoter
      • AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 16-1556-1 - 5-prime edge 
    CTCCAGACAG GGGTTTAGTG TTTTGAAGGT AAAATCACAA AGTAACTAAA 
    TTTGGGCCGA TAACAAAAAA GTCGCTTAGG AGATTGGACT TATTTGGGCC 
    TAAAACCTAA CACTTAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3510870 [Map]; Strand: c
      • AT3G11200.2 - [+] show detail - alfin-like 2
        Distance: -318; Region: promoter
      • AT3G11200.1 - [+] show detail - alfin-like 2
        Distance: -243; Region: promoter
      • AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 16-1556-1 - 3-prime edge 
    GTCTGGAGGA GTGTTATGTG ATGAGTTTCA GACATTTGTT AATGTCTGTA 
    AAATGTAAAC AAGAAAAAAA GAAATTACTT GAACACAAAC TTGGTGTGTT 
    TCTGTGATTT AAGATTTAGA TAAGTATAAA CNTTTAAAAT GGTAACNGTT 
    TTTCGAGCGA AACTGAATCA GATTATAGCA GAGACACTTG TAATGTAAAC 
    AATCTAAAGC AAAGCT

AT3G11200.1

Model type
Protein coding
Short Description
alfin-like 2
Curator Summary
AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11200.2

Model type
Protein coding
Short Description
alfin-like 2
Curator Summary
AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11210.1

Model type
Protein coding
Short Description
SGNH hydrolase-type esterase superfamily protein
Computational Description
SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR